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1 changed files with 172 additions and 129 deletions
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(define-module (glicid-non-free packages staging)
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#:use-module (guix licenses)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix utils)
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#:use-module (guix build utils)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system gnu)
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#:use-module (gnu packages)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages qt)
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#:use-module (gnu packages gl)
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#:use-module (gnu packages boost)
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#:use-module (gnu packages algebra)
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#:use-module (gnu packages gdb)
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#:use-module (gnu packages sqlite)
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#:use-module (gnu packages image-processing)
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#:use-module (gnu packages graphics)
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#:use-module (gnu packages maths)
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#:use-module (gnu packages mpi)
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#:use-module (gnu packages python)
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#:use-module (guix packages)
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#:use-module (guix build-system python)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages sphinx)
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#:use-module (gnu packages commencement)
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#:use-module (gnu packages graphviz)
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#:use-module (gnu packages multiprecision)
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#:use-module (glicid packages mpi)
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#:use-module (glicid utils))
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#:use-module (guix-science packages jupyter)
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#:use-module (gnu packages python-science)
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#:use-module (gnu packages machine-learning)
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#:use-module (gnu packages version-control)
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#:use-module (gnu packages check)
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#:use-module (gnu packages xml)
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#:use-module (gnu packages python-web)
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#:use-module (gnu packages python-build)
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#:use-module (gnu packages databases)
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#:use-module (gnu packages geo)
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#:use-module (gnu packages python-check)
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)
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(define-public loki
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(package
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(name "loki")
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(version "0.1.7")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://downloads.sourceforge.net/project/loki-lib/Loki/Loki%200.1.7/loki-"
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version ".zip"))
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(sha256
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(base32
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"0p23k4dipk5nnfpvhhqj9apz8rhnd62qdydjmzx8q78sxpwims4w"))))
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(build-system gnu-build-system)
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(inputs `(("gcc-toolchain" ,gcc-toolchain)))
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(synopsis
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"Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms.")
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(description
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"Loki is the name of a C++ software library written by Andrei Alexandrescu as part of his book Modern C++ Design.
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The library makes extensive use of C++ template metaprogramming and implements several commonly used tools: typelist, functor, singleton, smart pointer, object factory, visitor and multimethods.")
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(home-page "http://loki-lib.sourceforge.net/index.php?n=Main.HomePage")
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(license gpl3+)))
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;(use-modules (guix packages)
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; (guix download)
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;)
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(define-public yade
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(package
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(name "yade")
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(version "2022.01a")
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(source (origin
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(method url-fetch)
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(uri (string-append
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"https://gitlab.com/yade-dev/trunk/-/archive/2022.01a/trunk-"
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version ".tar.gz"))
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(sha256
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(base32
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"0k4hnvi70cqzl0q54kkbij6jwxydhfwcacp9s49n3fkaf1dihxiv"))))
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(build-system cmake-build-system)
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(define-public python-pytest-json-report
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(package
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(name "python-pytest-json-report")
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(version "1.5.0")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "pytest-json-report" version))
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(sha256
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(base32
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"1phmqr6x78yygpr79mkp43xnxrm6221rwwh06xgrp8aig1j3rpid"))))
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(build-system python-build-system)
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(propagated-inputs (list python-pytest python-pytest-metadata))
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(home-page "https://github.com/numirias/pytest-json-report")
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(synopsis "A pytest plugin to report test results as JSON files")
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(description
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"This package provides a pytest plugin to report test results as JSON files")
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(license license:expat))
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)
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(define-public python-obspy
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(package
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(name "python-obspy")
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(version "1.4.0")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "obspy" version))
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(sha256
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(base32
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"01jwzsjym35vc851hk5myd9qw2kjvp0mvjvkh6q34ms8k8fnwsik"))))
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(build-system python-build-system)
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(arguments
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`(#:configure-flags (list "-DENABLE_POTENTIAL_BLOCKS=OFF"
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(string-append "-DCMAKE_INSTALL_PREFIX="
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(assoc-ref %outputs "out"))
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(string-append "-DQGLVIEWER_INCLUDE_DIR="
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(assoc-ref %build-inputs
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"libqglviewer")))
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;; (string-append "-DQGLVIEWER_INCLUDE_DIR="
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;; libqglviewer))))
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#:phases (modify-phases %standard-phases
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(add-after 'unpack 'post-unpack
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(lambda* (#:key outputs inputs #:allow-other-keys)
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(mkdir-p "./build")
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(chdir "./build")))
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(replace 'configure
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(lambda* (#:key inputs outputs configure-flags
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#:allow-other-keys)
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(let ((out (assoc-ref outputs "out")))
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(apply invoke "cmake" "../" configure-flags)))))
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#:tests? #f))
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;; (lambda _ (invoke
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;; "cmake" "../trunk"
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;; configure-flags))))))
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(propagated-inputs `(("gdb" ,gdb)
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("sqlite" ,sqlite)
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("openmpi" ,openmpi)
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("python" ,python)
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("python-numpy" ,python-numpy)
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("python-matplotlib" ,python-matplotlib)
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("python-sphinx" ,python-sphinx)
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("python-ipython" ,python-ipython)
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("python-mpi4py" ,python-mpi4py)
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("python-mpmath" ,python-mpmath)
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("python-pygraphviz" ,python-pygraphviz)
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("python-xlib" ,python-xlib)
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("python-future" ,python-future)
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("python-pyqt" ,python-pyqt)
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("python-pyqtwebengine" ,python-pyqtwebengine)
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("python-qtpy" ,python-qtpy)))
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(inputs `(("boost" ,boost)
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("qtbase-5" ,qtbase-5)
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;; ("qt" ,qt)
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("freeglut" ,freeglut)
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("gts" ,gts)
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("pkg-config" ,pkg-config)
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("libqglviewer" ,libqglviewer)
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("eigen" ,eigen)
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;; ("loki" ,loki)
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;; ("vtk" ,vtk)
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; ("qtwebkit" ,qtwebkit)
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("openblas" ,openblas)
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("suitesparse" ,suitesparse)
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("gcc-toolchain" ,gcc-toolchain)
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("metis" ,metis)
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("cgal" ,cgal)
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("qtsvg" ,qtsvg)
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("qtwebengine" ,qtwebengine)
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("mpfr" ,mpfr)))
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'(#:tests? #f)) ;;; try to access service.iris.edu
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(synopsis
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"Yade is an extensible open-source framework for discrete numerical models, focused on Discrete Element Method.")
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(description
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"Yade is an extensible open-source framework for discrete numerical models, focused on Discrete Element Method. The computation parts are written in c++ using flexible object model, allowing independent implementation of new algorithms and interfaces. Python is used for rapid and concise scene construction, simulation control, postprocessing and debugging.")
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(home-page "https://www.yade-dem.org/")
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(license gpl3+)))
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(propagated-inputs (list python-decorator
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python-lxml
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python-matplotlib
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python-numpy
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python-requests
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python-scipy
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python-setuptools
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python-sqlalchemy))
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(native-inputs (list python-packaging python-pyproj python-pytest
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python-pytest-json-report))
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(home-page "https://www.obspy.org")
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(synopsis "ObsPy - a Python framework for seismological observatories.")
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(description "ObsPy - a Python framework for seismological observatories.")
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(license #f))
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)
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(define-public python-seisbench
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(package
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(name "python-seisbench")
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(version "0.3.2")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "seisbench" version))
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(sha256
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(base32
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"1n04pr8ri06q6ngyi8wnw13vhhw2w7kkhn87zrkbjjw49v157xzg"))))
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(build-system python-build-system)
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(arguments
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`(#:phases (modify-phases %standard-phases
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(delete 'check)(delete 'sanity-check))))
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(propagated-inputs (list python-h5py
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python-nest-asyncio
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python-numpy
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python-obspy
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python-pandas
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python-scipy
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python-pytorch
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python-tqdm))
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(native-inputs (list python-black
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python-flake8
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python-isort
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python-pre-commit
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python-pytest
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python-pytest-asyncio))
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(home-page "")
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(synopsis "The seismological machine learning benchmark collection")
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(description "The seismological machine learning benchmark collection")
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(license #f))
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)
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(define-public python-seisbench+cuda
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(package
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(inherit python-seisbench)
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(name "python-seisbench+cuda")
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)
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)
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(define-public python-esa-ptr
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(package
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(name "python-esa-ptr")
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(version "1.2")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "esa_ptr" version))
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(sha256
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(base32
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"1jjny1jsmircny4v5vyqb1hwan839gxdmwljh647b895qvqgr0lb"))))
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(build-system python-build-system)
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(home-page "https://juigitlab.esac.esa.int/python/ptr")
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(synopsis "ESA Planning Timeline Request package")
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(description "ESA Planning Timeline Request package")
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(license #f)))
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#! (define-public python-spiceypy
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(package
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(name "python-spiceypy")
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(version "5.1.2")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "spiceypy" version))
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(sha256
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(base32
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"10n0ia9q8f2fs7g8sycjvzgqmhl838vx1yb4f6jn5fl17q6yg7y9"))))
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(build-system python-build-system)
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(propagated-inputs (list python-numpy))
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(native-inputs (list python-black
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python-build
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python-codecov
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python-coverage
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python-numpy
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python-pandas
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python-pytest
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python-twine
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python-wheel))
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(home-page "https://github.com/AndrewAnnex/SpiceyPy")
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(synopsis "A Python Wrapper for the NAIF CSPICE Toolkit")
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(description
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"This package provides a Python Wrapper for the NAIF CSPICE Toolkit")
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(license license:expat))
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)
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(package
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(name "python-planetary-coverage")
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(version "1.0.0")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "planetary_coverage" version))
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(sha256
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(base32
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"17xv4i9k5h4p9bc5j2x3xa2malh77b4wnckk0kyghz5y560hbds4"))))
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(build-system python-build-system)
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(propagated-inputs (list python-esa-ptr python-matplotlib python-numpy
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python-pillow python-spiceypy))
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(home-page "https://juigitlab.esac.esa.int/python/planetary-coverage")
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(synopsis "Planetary coverage package")
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(description "Planetary coverage package")
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(license #f))
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!#
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(define-public yade-glicid-waves
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(package
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(inherit (transform-package ((instead-of "openmpi-glicid-waves" openmpi)
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yade) "waves"))
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(name "yade-glicid-waves")))
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yade-glicid-waves
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