guix-glicid/gnu/packages/glicid.scm

(define-module (gnu packages glicid)
  #:use-module (guix packages)
  #:use-module (guix download)
  #:use-module (guix git-download)
  #:use-module (guix build-system gnu)
  #:use-module (guix build-system cmake)
  #:use-module (guix licenses)
  #:use-module (gnu packages gawk)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages commencement)
  #:use-module (guix build-system python)
  #:use-module ((guix licenses) #:prefix license:)
  #:use-module ((guix utils) #:select (target-64bit?))
  #:use-module (gnu packages)
  #:use-module (gnu packages admin)
  #:use-module (gnu packages autotools)
  #:use-module (gnu packages base)
  #:use-module (gnu packages freeipmi)
  #:use-module (gnu packages linux)
  #:use-module (gnu packages mpi)
  #:use-module (gnu packages perl)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages parallel)
  #:use-module (gnu packages storage)
  #:use-module (gnu packages networking)
  #:use-module (gnu packages gtk)  
  #:use-module (gnu packages python)
  #:use-module (gnu packages python-science)
  #:use-module (gnu packages python-web)
  #:use-module (gnu packages python-xyz)
  #:use-module (gnu packages readline)
  #:use-module (gnu packages tcl)
  #:use-module (gnu packages tls)
  #:use-module (gnu packages commencement)
  #:use-module (gnu packages gcc)
  #:use-module (gnu packages chemistry)
  #:use-module (gnu packages sphinx)
  #:use-module (srfi srfi-1)
  #:use-module (gnu packages mpi)
  #:use-module (gnu packages sssd)
  #:use-module (gnu packages fabric-management)
  #:use-module (gnu packages benchmark)
  #:use-module (gnu packages messaging)
  #:use-module (gnu packages web)
  #:use-module (gnu packages gnome)
  #:use-module (gnu packages cluster)  
  #:use-module (gnu packages libevent)
  #:use-module (gnu packages xorg)
  #:use-module (gnu packages fontutils)
  #:use-module (gnu packages flex)
  #:use-module (gnu packages bison)
  #:use-module (gnu packages pkg-config)
  #:use-module (gnu packages autotools)
  #:use-module (gnu packages fontutils)
  #:use-module (gnu packages image))


(define-public glicid-pmix
 (package
  (name "glicid-pmix-3.1.5")
  (version "3.1.5")
   (source 
    (origin
     (method url-fetch)
     (uri (string-append "https://github.com/openpmix/openpmix/releases/download/v" version "/pmix-" version ".tar.bz2"))
     (sha256 (base32 "1xswdkfcrw123ghcr9gmrb852nzjbl4i6qwrid3xyma42yal34w8"))
    )
   )
  (build-system gnu-build-system)
  (arguments
   `(#:configure-flags
     (list
           (string-append "--with-hwloc=" (assoc-ref %build-inputs "hwloc") )
     )
    )
  )
  (synopsis "MPIX lib")
  (description  "MPIX. More to come. FIXIT")
  (home-page "https://www.gnu.org/software/hello/")
  (license gpl3+)
  (inputs `(
    	    ("libevent", libevent)
            ("hwloc" ,hwloc-2 "lib")
            ("perl", perl)
            ("gcc", gcc-10)
           )
  )
 )
)



(define-public glicid-custom-slurm-19.05
 (package 
  (inherit slurm) 
  (name "glicid-custom-slurm-19.05")
  (version "19.05.6")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://download.schedmd.com/slurm/slurm-" version ".tar.bz2"))
    (sha256 (base32 "1kj79r8hng5gp98ickgvj3im4gr19nzd3p3p8g6rl75axb8jin7h"))
   ))
   (arguments
   `(#:configure-flags
     (list "--enable-pam" "--sysconfdir=/etc/slurm"
            "--disable-static"
            (string-append "--with-freeipmi=" (assoc-ref %build-inputs "freeipmi"))
            (string-append "--with-hwloc=" (assoc-ref %build-inputs "hwloc"))
            (string-append "--with-json=" (assoc-ref %build-inputs "json-c"))
            (string-append "--with-munge=" (assoc-ref %build-inputs "munge"))
            (string-append "--with-pmix=" (assoc-ref %build-inputs "glicid-pmix"))

            ;; 32-bit support is marked as deprecated and needs to be
            ;; explicitly enabled.
            ;;;; ,@(if (target-64bit?) '() '("--enable-deprecated"))
      
     )
    )
  )

   (inputs `(("gtk+-2" ,gtk+-2)
             ("gcc", gcc-10)
             ("glicid-pmix", glicid-pmix)
                ,@(package-inputs slurm)

   
  ))
  (propagated-inputs
     `(
       ("sssd" ,sssd)
        ))
  
))


(define-public glicid-custom-slurm-20.02
 (package 
  (inherit glicid-custom-slurm-19.05)
  (name "glicid-custom-slurm-20.02")
  (version "20.02.6")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://download.schedmd.com/slurm/slurm-" version ".tar.bz2"))
    (sha256 (base32 "0ji76jgyny6jqdsi4nj9wmk0ny539aq4vvhp2jx99mwwdzpcv701"))
   ))
))


(define-public glicid-custom-slurm-20.11
 (package 
  (inherit glicid-custom-slurm-20.02)
  (name "glicid-custom-slurm-20.11")
  (version "20.11.3")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://download.schedmd.com/slurm/slurm-" version ".tar.bz2"))
    (sha256 (base32 "1s70x6yh60sx63dgmp5rlhq8jcz7kxv9pk8gbs9v1jg8zps5h5bk"))
   ))
))




(define-public glicid-librdkafka-09
 (package 
  (inherit librdkafka) 
  (name "glicid-librdkafka-09")
  (version "0.9.2")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://github.com/edenhill/librdkafka/archive/v" version ".tar.gz"))
    (sha256 (base32 "0938yn1msaq8xcj5z7b3jcdy6rslh9kxmvz01r8rdcgbarlvchy2"))
   ))
))



(define-public glicid-x2go
 (package 
  (name "glicid-x2go")
  (version "4.1.0.3")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://code.x2go.org/releases/source/x2goserver/x2goserver-" version ".tar.gz"))
    (sha256 (base32 "1l6wd708kbipib4ldprfiihqmj4895nifg0bkws4x97majislxk7"))
   ))

    (native-inputs
     `(("autoconf" ,autoconf)
       ("automake" ,automake)
       ("libtool" ,libtool)))

   (inputs
    `(("perl" , perl)))

   (build-system gnu-build-system)
   (synopsis "X2go")
   (description "X2go")
   (license "not checked")
   (home-page "https://wiki.x2go.org")
  )  
)

;(define-public glicid-gromacs-openmpi
; (package
;  (inherit gromacs)
;  (name "glicid-gromacs-openmpi")
;  (inputs `(("openmpi", openmpi)
;                    ,@(package-inputs gromacs)))
;  (build-system cmake-build-system)
;  (arguments
;       `(#:configure-flags configure-flags)
;               (append configure-flags          (list "-DGMX_MPI=on"
;               "-DCMAKE_C_COMPILER=mpicc"
;               "-DCMAKE_CXX_COMPILER=mpiicxx"
;               ))
;  )
; )
;)


(define-public glicid-gromacs-openmpi
 (package
  (inherit gromacs)
  (name "glicid-gromacs-openmpi")
  (inputs `(("openmpi", openmpi)
   ;;         ("openssh", openssh) ;; only for tests... disabled now
                    ,@(package-inputs gromacs)))
  (build-system cmake-build-system)

   (arguments
       `(#:configure-flags
         (list "-DGMX_DEVELOPER_BUILD=on" ; Needed to run tests
               ;; Unbundling
               "-DGMX_USE_LMFIT=EXTERNAL"
               "-DGMX_BUILD_OWN_FFTW=off"
               "-DGMX_EXTERNAL_BLAS=on"
               "-DGMX_EXTERNAL_LAPACK=on"
               "-DGMX_EXTERNAL_TNG=on"
               "-DGMX_EXTERNAL_ZLIB=on"
               "-DGMX_EXTERNAL_TINYXML2=on"
               ;; special glicid
               "-DGMX_MPI=on"
               "-DCMAKE_C_COMPILER=mpicc"
               "-DCMAKE_CXX_COMPILER=mpicxx"
	       "-DGMX_DOUBLE=off"
	       "-DGMX_OPENMP=on"
               "-DGMX_SIMD=AVX2_256"
               (string-append "-DTinyXML2_DIR="
                              (assoc-ref %build-inputs "tinyxml2"))
               ;; Workaround for cmake/FindSphinx.cmake version parsing that does
               ;; not understand the guix-wrapped `sphinx-build --version' answer
               (string-append "-DSPHINX_EXECUTABLE_VERSION="
                              ,(package-version python-sphinx)))
         #:tests? #f
         #:phases
         (modify-phases %standard-phases
           (add-after 'unpack 'fixes
             (lambda* (#:key inputs #:allow-other-keys)
               ;; Still bundled: part of gromacs, source behind registration
               ;; but free software anyways
               ;;(delete-file-recursively "src/external/vmd_molfile")
               ;; Still bundled: threads-based OpenMPI-compatible fallback
               ;; designed to be bundled like that
               ;;(delete-file-recursively "src/external/thread_mpi")
               ;; Unbundling
               (delete-file-recursively "src/external/lmfit")
               (delete-file-recursively "src/external/clFFT")
               (delete-file-recursively "src/external/fftpack")
               (delete-file-recursively "src/external/build-fftw")
               (delete-file-recursively "src/external/tng_io")
               (delete-file-recursively "src/external/tinyxml2")
               (delete-file-recursively "src/external/googletest")
               (copy-recursively (assoc-ref inputs "googletest-source")
                                 "src/external/googletest")
               ;; This test warns about the build host hardware, disable
               (substitute* "src/gromacs/hardware/tests/hardwaretopology.cpp"
                 (("TEST\\(HardwareTopologyTest, HwlocExecute\\)")
                  "void __guix_disabled()"))
               #t)))))



  )

)



;; pour futures customisations.

;(define-public glicid-openmpi-gcc-10
; (package
;  (inherit openmpi)
;  (name "glicid-openpmi-gcc-10")
;  (inputs `(("gcc-10", gcc-10)
;            ("gfortran-10", gfortran-10)
;                  ,@(package-inputs openmpi)))
;  )
;)

(define-public glicid-rdma-core
(package
    (inherit rdma-core)
    (name "glicid-rdma-core")
    (version "31.0")
    (source (origin
              (method url-fetch)
              (uri (string-append "https://github.com/linux-rdma/rdma-core"
                                  "/releases/download/v" version "/rdma-core-"
                                  version ".tar.gz"))
              (sha256
               (base32
                "02ym93k6khfmzm9rml79x9zh1dy8231sygw16r287mhwp0x9mbji"))))
 )
)


(define-public glicid-rdma-core-gcc-10
(package
    (inherit rdma-core)
    (name "glicid-rdma-core-gcc-10")
    (version "32.0")
    (source (origin
              (method url-fetch)
              (uri (string-append "https://github.com/linux-rdma/rdma-core"
                                  "/releases/download/v" version "/rdma-core-"
                                  version ".tar.gz"))
              (sha256
               (base32
                "1z1i741bcn9vchmkjs8nxj0c0bw0jr53zj74l839n2wrb45f55w1"))))
    (inputs `(("gcc-10", gcc-10)
      ,@(package-inputs rdma-core)))
 )
)

(define-public glicid-libfabric-gcc-10
(package
    (inherit libfabric)
    (name "glicid-libfabric-gcc-10")
    (version "1.11.1")
    (source
     (origin
       (method url-fetch)
       (uri
        (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
                       version "/libfabric-" version ".tar.bz2"))
       (sha256
        (base32 "1rqz25wvhsnsd6iqz70yga2aak02wfnvqcxgy6gd1gi2cfn7sam7"))))

    (inputs `(("gcc-10", gcc-10)
      ,@(package-inputs libfabric)))
 )
)


(define-public glicid-ucx-gcc-10
 (package
  (inherit ucx)
  (name "glicid-ucx-gcc-10")
  (version "1.9.0")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://github.com/openucx/ucx/releases/download/v" version "/ucx-" version ".tar.gz" ))
    (sha256 (base32 "1yrmwvjxi3najax1wz4irpzxns6cp74ksdx4i1049mf03n2ci8m7"))
   ))

  (inputs `(("gcc-10", gcc-10)
            ("gfortran-10", gfortran-10)
                  ,@(package-inputs ucx)))
  )
)

(define-public glicid-openmpi-gcc-10
 (package
  (inherit openmpi)
  (name "glicid-openpmi-gcc-10")
  (version "4.1.0")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-" version ".tar.gz"))
    (sha256 (base32 "02hlg2pgk1np78dqlplwd5qcgrrymy8s49ng4sdrscqmvp1ng112"))
   ))

  (inputs `(("gcc-10", gcc-10)  
            ("gfortran-10", gfortran-10)
	    ("glicid-ucx-gcc-10",glicid-ucx-gcc-10)
;;            ("glicid-rdma-core",glicid-rdma-core) ;;; segfault !!! 
                  ,@(package-inputs openmpi)))
  )
)  

(define-public glicid-intel-mpi-benchmarks
 (package
  (inherit intel-mpi-benchmarks/openmpi)
  (name "glicid-intel-mpi-benchmarks")
  (inputs `(("glicid-openmpi-gcc-10", glicid-openmpi-gcc-10)  
                  ,@(package-inputs intel-mpi-benchmarks/openmpi)))
  )
)  




(define-public glicid-gromacs-gcc-10
 (package
  (inherit gromacs)
  (name "glicid-gromacs-gcc-10")
  (version "2020.3")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "http://ftp.gromacs.org/pub/gromacs/gromacs-" version ".tar.gz"))
    (sha256 (base32 "1acjrhcfzpqy2dncblhj97602jbg9gdha4q1bgji9nrj25lq6cch"))
   ))

  (inputs `(("gcc-10", gcc-10)
            ("gfortran-10", gfortran-10)
            ("glicid-openmpi-gcc-10", glicid-openmpi-gcc-10)
                    ,@(package-inputs gromacs)))
))


(define-public glicid-python-nbxmpp
 (package 
  (inherit python-nbxmpp) 
  (name "glicid-python-nbxmpp")
  (version "1.0.2")
  (source
     (origin
       (method url-fetch)
       (uri (pypi-uri "nbxmpp" version))
       (sha256
        (base32
         "0vw5drr077w9ks4crnw6pwa4735ycyjdcm54knc3w4in4x5027wr"))))

))


(define-public glicid-gajim
 (package
  (inherit gajim)
  (name "glicid-gajim")
  (version "1.2.2")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://gajim.org/downloads/1.2/gajim-" version ".tar.gz"))
    (sha256 (base32 "1gfcp3b5nq43xxz5my8vfhfxnnli726j3hzcgwh9fzrzzd9ic3gx"))
   ))

  (inputs `(("python-packaging", python-packaging)
            ("glicid-python-nbxmpp", glicid-python-nbxmpp)
	    ("python-css-parser", python-css-parser)
       ,@(package-inputs gajim)))

   (propagated-inputs
     `(
       ("glib-networking" ,glib-networking)
       ("libsoup" ,libsoup)
       ("gnutls" , gnutls)
	))
))


;;26.2 is ok : "1ilns8spik1xz2n668pf0awp4n7b3q7n886ml0q3bslb8fmqfl0i"
;;27.1 is ok : "1mqaxzsbhm7kh20dwdrapvx4x86wkbk1wgb2yyjz73l6bymv7vir"
;;28.1 is ok : "04y7wm2an842hf6idlbjvmiqnlh05xb2i9rhdb5ifzw6n3ciz5nr" 
;; 30.0 crash : "1ycvd8sp3giwjbp0x3nvb8q2wrdc50s7lmzf44b9l51qgcnvvq93"
;; 31.0 crash :
;; 32.0 crash : "1z1i741bcn9vchmkjs8nxj0c0bw0jr53zj74l839n2wrb45f55w1"

(define-public glicid-specific-rdma-core-gcc-10
  (package
    (inherit rdma-core)
    (name "glicid-specific-rdma-core-gcc-10")
    (version "28.1")
    (source (origin
              (method url-fetch)
              (uri (string-append "https://github.com/linux-rdma/rdma-core"
                                  "/releases/download/v" version "/rdma-core-"
                                  version ".tar.gz"))
              (sha256
               (base32
                "04y7wm2an842hf6idlbjvmiqnlh05xb2i9rhdb5ifzw6n3ciz5nr"))))
      (inputs `(("gcc", gcc-10)
      ,@(package-inputs rdma-core)))

 )
)

(define-public glicid-specific-libfabric-gcc-10
(package
    (inherit libfabric)
    (name "glicid-specific-libfabric-gcc-10")
    (version "1.11.1")
    (source
     (origin
       (method url-fetch)
       (uri
        (string-append "https://github.com/ofiwg/libfabric/releases/download/v"
                       version "/libfabric-" version ".tar.bz2"))
       (sha256
        (base32 "1rqz25wvhsnsd6iqz70yga2aak02wfnvqcxgy6gd1gi2cfn7sam7"))))

    (inputs `(("gcc", gcc-10)
      ("rdma-core", glicid-specific-rdma-core-gcc-10)
      ,@(package-inputs libfabric)))
 )
)

(define-public glicid-specific-ucx-gcc-10
 (package
  (inherit ucx)
  (name "glicid-specific-ucx-gcc-10")
  (version "1.9.0")
  (source 
   (origin
    (method url-fetch)
    (uri (string-append "https://github.com/openucx/ucx/releases/download/v" version "/ucx-" version ".tar.gz" ))
    (sha256 (base32 "1yrmwvjxi3najax1wz4irpzxns6cp74ksdx4i1049mf03n2ci8m7"))
   ))

  (inputs `(("gcc", gcc-10)
            ("gfortran", gfortran-10)
            ("libfabric", glicid-specific-libfabric-gcc-10)
	    ("rdma-core",glicid-specific-rdma-core-gcc-10)

                  ,@(package-inputs ucx)))
  )
)


(define-public glicid-specific-openmpi-gcc-10
  (package
    (inherit glicid-openmpi-gcc-10)
    (name "glicid-specific-openmpi-gcc-10")
      (inputs `(
       ("gcc",gcc-10)
       ("rdma-core",glicid-specific-rdma-core-gcc-10)
       ("ucx",glicid-specific-ucx-gcc-10)
       ("libfabric",glicid-specific-libfabric-gcc-10)
      ,@(package-inputs glicid-openmpi-gcc-10)))
  )
)

(define-public glicid-specific-intel-mpi-benchmarks
 (package
  (inherit glicid-intel-mpi-benchmarks)
  (name "glicid-specific-intel-mpi-benchmarks")
  (inputs `(("openmpi", glicid-specific-openmpi-gcc-10)  
                  ,@(package-inputs glicid-intel-mpi-benchmarks)))
  )
)  


(define-public glicid-keepalived
  (package
    (inherit keepalived)
    (name "glicid-keepalived")
    (version "2.1.5")
    (source (origin
              (method url-fetch)
              (uri (string-append
                    "http://www.keepalived.org/software/keepalived-"
                    version ".tar.gz"))

              (sha256
               (base32
                "0n92fdlmm251scq2j7w1nqwly8jsla4sxrd0jnfb6nn9qp5pqkfr"))))

   (arguments
   `(#:configure-flags
     (list (string-append "--enable-snmp")
           (string-append "--enable-snmp-checker")
	   (string-append "--enable-snmp-rfc")
     )
    )
      
   )


      (inputs `(("net-snmp", net-snmp)
      ,@(package-inputs keepalived)))



 )
)

(define-public glicid-motif
  (package
    (name "glicid-motif")
    (version "2.3.8")
    (source (origin
              (method url-fetch)
              (uri (string-append "https://sourceforge.net/projects/motif/files/Motif%202.3.8%20Source%20Code/motif-2.3.8.tar.gz/download"))

              (sha256 (base32 "1rxwkrhmj8sfg7dwmkhq885valwqbh26d79033q7vb7fcqv756w5"))
             )
    )
    (build-system gnu-build-system)

(arguments
     `(#:make-flags
;;	       #:make-flags
       (list (string-append "PREFIX=" %output)
;             (string-append "CC=" ,(cc-for-target))
             ;; Xft.h #includes <ft2build.h> without ‘freetype2/’.  The Makefile
             ;; works around this by hard-coding /usr/include & $PREFIX.
             (string-append "CPPFLAGS=-I"
                            (assoc-ref %build-inputs "freetype")
                            "/include/freetype2")
             "V=1")
 )
)

(inputs
      `(("libxext" ,libxext)
        ("libx11", libx11)
        ("freetype",freetype)
	("libxft",libxft)
        ("xbitmaps",xbitmaps)
        ("pkg-config" ,pkg-config)
	("flex" ,flex)
	("bison" ,bison)
        ("libxt" ,libxt)))

  (synopsis "Motif")
    (description "Motif ")
    (home-page "https://sourceforge.net/untested")
    (license " ")

 )
)

(define-public glicid-xmgrace
  (package
    (name "glicid-xmgrace")
    (version "5.1.25")
    (source (origin
              (method git-fetch)
              (uri (git-reference
              (url "https://oauth2:9i-PgbC2w_JEx6DUUqzf@gitlab.univ-nantes.fr/CCIPL/legacy_code_mirror/grace.git")
              (commit (string-append "v" version))))
              (sha256 (base32 "1wb8v0q8xa2akas0swpgdgw1s66i50k7kh1g2f894hnk91fzx56z"))
             )
    )
    (build-system gnu-build-system)

 (arguments
     `(
       #:phases
       (modify-phases %standard-phases
         (add-after 'configure 'patch-/bin/sh
           (lambda _
             (substitute* '("Make.conf")
              (("/bin/sh") (which "bash"))
             )
           ) 
         )
        )
       )
      ) 

    (inputs
      `(
        ("libx11", libx11)
        ("libxft",libxft)
        ("libxt",libxt)
	("libxpm",libxpm)
        ("libxext" ,libxext)
        ("autoconf", autoconf)
        ("glicid-motif" ,glicid-motif)
        ("fontconfig", fontconfig)
        ("gfortran", gfortran)
        ("libjpeg-turbo", libjpeg-turbo)
;;        ("libxmhtml", libxmhtml)
       )
    )


   (synopsis "Xmgrace")
   (description "xmgrace")
   (home-page "https://sourceforge.net/untested")
   (license " ")

 )
)



;;; glicid.scm ends here