2021-10-19 22:45:43 +02:00
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(define-module (glicid packages glicid)
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2025-02-10 13:12:59 +01:00
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix build-system cmake)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system python)
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#:use-module (guix build-system ruby)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages bison)
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#:use-module (gnu packages chemistry)
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#:use-module (gnu packages flex)
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#:use-module (gnu packages fontutils)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages image)
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#:use-module (gnu packages messaging)
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#:use-module (gnu packages mpi)
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#:use-module (gnu packages networking)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages ruby)
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#:use-module (gnu packages sphinx)
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#:use-module (gnu packages xorg)
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#:use-module ((guix licenses) #:prefix license:)
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)
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2021-05-02 21:33:17 +02:00
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2020-07-31 09:29:12 +02:00
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(define-public glicid-librdkafka-09
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2025-02-10 13:12:59 +01:00
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(package
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(inherit librdkafka)
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(name "glicid-librdkafka-09")
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(version "0.9.2")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/edenhill/librdkafka/archive/v" version ".tar.gz"))
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(sha256 (base32 "0938yn1msaq8xcj5z7b3jcdy6rslh9kxmvz01r8rdcgbarlvchy2"))))))
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2020-07-31 09:29:12 +02:00
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(define-public glicid-x2go
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2025-02-10 13:12:59 +01:00
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(package
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(name "glicid-x2go")
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(version "4.1.0.3")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://code.x2go.org/releases/source/x2goserver/x2goserver-" version ".tar.gz"))
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(sha256 (base32 "1l6wd708kbipib4ldprfiihqmj4895nifg0bkws4x97majislxk7"))))
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(native-inputs `(("autoconf" ,autoconf)
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("automake" ,automake)
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("libtool" ,libtool)))
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(inputs `(("perl" ,perl)))
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(build-system gnu-build-system)
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(synopsis "X2go")
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(description "X2go")
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(license license:gpl2+) ;not checked
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(home-page "https://wiki.x2go.org")))
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2020-07-31 09:29:12 +02:00
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(define-public glicid-gromacs-openmpi
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2025-02-10 13:12:59 +01:00
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(package
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(inherit gromacs)
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(name "glicid-gromacs-openmpi")
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(inputs `(("openmpi" ,openmpi)
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,@(package-inputs gromacs)))
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(build-system cmake-build-system)
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(arguments
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`(#:configure-flags (list "-DGMX_DEVELOPER_BUILD=on"
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"-DGMX_USE_LMFIT=EXTERNAL"
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"-DGMX_BUILD_OWN_FFTW=off"
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"-DGMX_EXTERNAL_BLAS=on"
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"-DGMX_EXTERNAL_LAPACK=on"
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"-DGMX_EXTERNAL_TNG=on"
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"-DGMX_EXTERNAL_ZLIB=on"
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"-DGMX_EXTERNAL_TINYXML2=on"
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"-DGMX_MPI=on"
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"-DCMAKE_C_COMPILER=mpicc"
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"-DCMAKE_CXX_COMPILER=mpicxx"
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"-DGMX_DOUBLE=off"
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"-DGMX_OPENMP=on"
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"-DGMX_SIMD=AVX2_256"
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(string-append "-DTinyXML2_DIR=" (assoc-ref %build-inputs "tinyxml2"))
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(string-append "-DSPHINX_EXECUTABLE_VERSION="
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,(package-version python-sphinx)))
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#:tests? #f
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#:phases (modify-phases %standard-phases
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(add-after 'unpack 'fixes
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(lambda* (#:key inputs #:allow-other-keys)
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(delete-file-recursively "src/external/lmfit")
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(delete-file-recursively "src/external/clFFT")
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(delete-file-recursively "src/external/fftpack")
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(delete-file-recursively "src/external/build-fftw")
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(delete-file-recursively "src/external/tng_io")
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(delete-file-recursively "src/external/tinyxml2")
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(delete-file-recursively "src/external/googletest")
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(copy-recursively (assoc-ref inputs "googletest-source") "src/external/googletest")
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(substitute* "src/gromacs/hardware/tests/hardwaretopology.cpp"
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(("TEST\\(HardwareTopologyTest, HwlocExecute\\)")
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"void __guix_disabled()"))
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#t)))))))
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2020-07-31 09:29:12 +02:00
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2020-09-20 21:40:15 +02:00
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(define-public glicid-python-nbxmpp
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2025-02-10 13:12:59 +01:00
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(package
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(inherit python-nbxmpp)
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(name "glicid-python-nbxmpp")
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(version "1.0.2")
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(source (origin
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(method url-fetch)
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(uri (pypi-uri "nbxmpp" version))
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(sha256 (base32 "0vw5drr077w9ks4crnw6pwa4735ycyjdcm54knc3w4in4x5027wr")))) ))
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2021-05-05 14:10:23 +02:00
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2020-12-04 17:20:45 +01:00
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(define-public glicid-motif
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2025-02-10 13:12:59 +01:00
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(package
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(name "glicid-motif")
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(version "2.3.8")
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(source (origin
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(method url-fetch)
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(uri (string-append "mirror://sourceforge/motif/Motif%202.3.8%20Source%20Code/motif-2.3.8.tar.gz"))
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(file-name (string-append name "-" version ".tar.gz"))
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(sha256 (base32 "1rxwkrhmj8sfg7dwmkhq885valwqbh26d79033q7vb7fcqv756w5"))))
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(build-system gnu-build-system)
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(arguments
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`(#:make-flags
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(list (string-append "PREFIX=" %output)
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(string-append "CPPFLAGS=-I" (assoc-ref %build-inputs "freetype") "/include/freetype2")
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"V=1")))
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(inputs `(("libxext" ,libxext)
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("libx11" ,libx11)
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("freetype" ,freetype)
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("libxft" ,libxft)
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("xbitmaps" ,xbitmaps)
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("pkg-config" ,pkg-config)
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("flex" ,flex)
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("bison" ,bison)
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("libxt" ,libxt)))
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(synopsis "Motif")
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(description "Motif ")
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(home-page "https://sourceforge.net/untested")
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(license license:gpl2+)))
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2020-12-04 17:20:45 +01:00
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(define-public glicid-xmgrace
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2025-02-10 13:12:59 +01:00
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(package
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(name "glicid-xmgrace")
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(version "5.1.25")
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(source (origin
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(method git-fetch)
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(uri (git-reference
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(url "https://oauth2:glpat-RsX2GjsD2WrzXubiJeou@gitlab.univ-nantes.fr/CCIPL/legacy_code_mirror/grace.git")
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(commit (string-append "v" version))))
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(file-name (git-file-name name version))
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(sha256 (base32 "1wb8v0q8xa2akas0swpgdgw1s66i50k7kh1g2f894hnk91fzx56z"))))
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(build-system gnu-build-system)
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(arguments
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`(#:phases (modify-phases %standard-phases
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(add-after 'configure 'patch-/bin/sh
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(lambda _
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(substitute* '("Make.conf")
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(("/bin/sh")
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(which "bash"))))))))
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(inputs `(("libx11" ,libx11)
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("libxft" ,libxft)
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("libxt" ,libxt)
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("libxpm" ,libxpm)
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("libxext" ,libxext)
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("autoconf" ,autoconf)
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("glicid-motif" ,glicid-motif)
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("fontconfig" ,fontconfig)
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("gfortran" ,gfortran)
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("libjpeg-turbo" ,libjpeg-turbo) ))
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(synopsis "Xmgrace")
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(description "xmgrace")
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(home-page "https://sourceforge.net/untested")
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(license license:gpl2+) ))
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2021-04-10 18:08:29 +02:00
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2025-06-23 16:41:05 +02:00
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;(define-public ruby-asciidoctor-revealjs
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; (package
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; (name "ruby-asciidoctor-revealjs")
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; (version "4.1.0")
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; (source (origin
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; (method url-fetch)
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; (uri (rubygems-uri "asciidoctor-revealjs" version))
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; (sha256
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; (base32
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; "03vmbcc3x059h17ry4qwk1p0yar9wgh87l2qssi307gy45cjw2mq"))))
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; (build-system ruby-build-system)
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; (arguments
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; '(#:tests? #f))
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; (propagated-inputs `(("ruby-asciidoctor" ,ruby-asciidoctor)
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; ("ruby-concurrent" ,ruby-concurrent)
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; ("ruby-asciidoctor-kroki" ,ruby-asciidoctor-kroki)
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; ("ruby-thread-safe" ,ruby-thread-safe)))
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; (synopsis "Converts AsciiDoc documents into HTML5 presentations designed to be executed by the reveal.js presentation framework.")
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; (description "Converts AsciiDoc documents into HTML5 presentations designed to be executed by the reveal.js presentation framework.")
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; (home-page "https://github.com/asciidoctor/asciidoctor-reveal.js")
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; (license license:expat)))
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2021-04-10 18:08:29 +02:00
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2025-06-23 16:41:05 +02:00
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;(define-public ruby-asciidoctor-kroki
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; (package
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; (name "ruby-asciidoctor-kroki")
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; (version "0.4.0")
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; (source (origin
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; (method url-fetch)
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; (uri (rubygems-uri "asciidoctor-kroki" version))
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; (sha256 (base32 "13gx22xld4rbxxirnsxyrsajy9v666r8a4ngms71611af5afgk6w"))))
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; (build-system ruby-build-system)
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; (arguments
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; '(#:tests? #f))
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; (propagated-inputs `(("ruby-asciidoctor" ,ruby-asciidoctor)))
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; (synopsis "An extension for Asciidoctor to convert diagrams to images using https://kroki.io")
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; (description "An extension for Asciidoctor to convert diagrams to images using https://kroki.io")
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; (home-page "https://github.com/Mogztter/asciidoctor-kroki")
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; (license license:expat)))
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