guix-glicid/glicid/packages/maths.scm

(define-module (glicid packages maths)
               #:use-module (guix packages)
               #:use-module (glicid utils)
               #:use-module (guix utils)
               #:use-module (guix gexp)
               #:use-module ((gnu packages maths) #:prefix gnu:)
               #:use-module (guix download)
               #:use-module (guix git-download)
               #:use-module (guix build-system cmake)
               #:use-module (gnu packages commencement)
               #:use-module (gnu packages compression)
               #:use-module (gnu packages mpi)
               #:use-module ((guix licenses) #:prefix license:)
               )

(define-public scalapack-upstream
               (package
                 (inherit gnu:scalapack)
                 (name "scalapack-upstream")
                 (version "2.1.0-new-upstream")
                 (source (origin
                           (method git-fetch)
                           (uri (git-reference
                                  (url
                                    "https://oauth2:glpat-RsX2GjsD2WrzXubiJeou@gitlab.univ-nantes.fr/CCIPL/legacy_code_mirror/scalapack.git")
                                  (commit "myv2.0.2")))
                           (file-name "scalapack-univ-myv2")
                           (sha256 (base32 "1ccic46psf2hl9wsyflvkn5rxg8k17q578m9mzimvm9brbggf0na"))))
                 (arguments
                   `(#:configure-flags `("-DBUILD_SHARED_LIBS:BOOL=YES")
                     #:phases (modify-phases %standard-phases
                                             (add-before 'check 'mpi-setup
                                                         ,%openmpi-setup))))))

(define local:scalapack scalapack-upstream)

(define-public scalapack-latest (latest-version local:scalapack gnu:scalapack))

(define-public openblas-upstream-0.3.15
               (package
                 (inherit gnu:openblas)
                 (name "openblas-upstream")
                 (version "0.3.15")
                 (source (origin
                           (method url-fetch)
                           (uri (string-append "https://github.com/xianyi/OpenBLAS/releases/download/v" version "/OpenBLAS-" version ".tar.gz"))
                           (sha256 (base32 "1gjbkrsh6n28hdp2ciyjigc8vg764d2r0jbzl63v753mjzn9va9h"))))))


(define-public hdf5-glicid
               (package
                 (inherit gnu:hdf5-parallel-openmpi)
                 (name "hdf5-glicid")
                 (inputs (modify-inputs (package-inputs gnu:hdf5-parallel-openmpi)
                                        (prepend gfortran-toolchain)))))


(define local:openblas openblas-upstream-0.3.15)
(define-public scalapack-latest (latest-version local:openblas gnu:openblas))

(define-public libsolv-upstream
               (package
                 (name "libsolv")
                 (version "0.7.23")
                 (source (origin
                           (method git-fetch)
                           (uri (git-reference
                                  (url "https://github.com/openSUSE/libsolv.git")
                                  (commit version)))
                           (file-name (string-append name "-" version ".tar.gz"))
                           (sha256 (base32 "12z63kcna9swh3vzxk3sac0l4by5z8q22wip9cyq5b7wp9m3hn4b"))))
                 (build-system cmake-build-system)
                 (inputs (list zlib))
                 (home-page "https://github.com/openSUSE/libsolv")
                 (synopsis "libsolv, a free package dependency solver using a satisfiability algorithm.")
                 (description "libsolv, a free package dependency solver using a satisfiability algorithm.")
                 (license license:bsd-3)) )

(define-public glicid-dealii
               (package
                 (inherit gnu:dealii)
                 (version "9.6.0")
                 (name "glicid-dealii")
                 (arguments
                   (list #:build-type "Release"
                         #:tests? #f
                         #:configure-flags
                         #~(let ((doc (string-append #$output:doc "/share/doc/"
                                                     #$name "-" #$version)))
                             (list "-DDEAL_II_COMPONENT_DOCUMENTATION=OFF"
                                   (string-append "-DCMAKE_CXX_FLAGS='-march=znver3'")
                                   (string-append "-DDEAL_II_DOCREADME_RELDIR=" doc)
                                   (string-append "-DDEAL_II_DOCHTML_RELDIR=" doc "/html")
                                   "-DDEAL_II_COMPILE_EXAMPLES=OFF"
                                   (string-append "-DDEAL_II_EXAMPLES_RELDIR=" doc
                                                  "/examples")))
                         #:phases
                         #~(modify-phases %standard-phases
                                          (add-after 'set-paths 'unset-cpath
                                                     (lambda _
                                                       (unsetenv "CPATH")))
                                          (add-after 'install 'remove-build-logs
                                                     (lambda _
                                                       (let ((doc (string-append #$output:doc "/share/doc/"
                                                                                 #$name "-" #$version)))
                                                         (for-each delete-file
                                                                   (map (lambda (f) (string-append doc "/" f))
                                                                        '("detailed.log" "summary.log"))))))))) ))

(define trilinos-for-dealii-openmpi
  (@@ (gnu packages maths) trilinos-for-dealii-openmpi))

(define-public glicid-dealii-openmpi
               (package
                 (inherit glicid-dealii)
                 (name "glicid-dealii-openmpi")
                 (inputs
                   (modify-inputs (package-inputs glicid-dealii)
                                  (delete "arpack")
                                  (prepend gnu:arpack-ng-openmpi
                                           gnu:metis
                                           gnu:scalapack)))
                 (propagated-inputs
                   (modify-inputs (package-propagated-inputs glicid-dealii)
                                  (delete "hdf5" "kokkos" "sundials")
                                  (prepend gnu:hdf5-parallel-openmpi
                                           openmpi
                                           gnu:p4est-openmpi
                                           gnu:petsc-openmpi
                                           gnu:slepc-openmpi
                                           gnu:sundials-openmpi
                                           trilinos-for-dealii-openmpi)))
                 (arguments
                   (substitute-keyword-arguments (package-arguments glicid-dealii)
                                                 ((#:configure-flags flags)
                                                  #~(cons "-DDEAL_II_WITH_MPI=ON" #$flags))
                                                 ((#:phases phases #~%standard-phases)
                                                  #~(modify-phases #$phases
                                                                   (delete 'unset-cpath)))))
                 (synopsis "Finite element library (with MPI support)")))