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revert glicid.scm

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Jean-François GUILLAUME 2022-05-02 12:25:41 +02:00
parent 0b0077a8ed
commit 92884dc449
1 changed files with 144 additions and 116 deletions
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108
glicid/packages/glicid.scm
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@ -4,10 +4,11 @@
#:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake)
#:use-module (guix build-system python)
; #:use-module (guix licenses)
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
#:use-module (gnu packages commencement)
#:use-module (guix build-system python)
#:use-module ((guix licenses) #:prefix license:)
#:use-module ((guix utils) #:select (target-64bit?))
#:use-module (gnu packages)
@ -86,12 +87,19 @@
#:use-module (gnu packages sphinx)
#:use-module (gnu packages tls)
#:use-module (gnu packages web)
;; #:use-module (gnu packages glicid)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages virtualization)
;; #:use-module (glicid packages storage)
#:use-module (glicid packages mpi)
#:use-module (glicid packages gcc)
)
;;;;;;;;
(define-public glicid-librdkafka-09
(package
(inherit librdkafka)
@ -102,10 +110,10 @@
(method url-fetch)
(uri (string-append "https://github.com/edenhill/librdkafka/archive/v" version ".tar.gz"))
(sha256 (base32 "0938yn1msaq8xcj5z7b3jcdy6rslh9kxmvz01r8rdcgbarlvchy2"))
)
)
)
)
))
))
(define-public glicid-x2go
(package
@ -116,14 +124,16 @@
(method url-fetch)
(uri (string-append "https://code.x2go.org/releases/source/x2goserver/x2goserver-" version ".tar.gz"))
(sha256 (base32 "1l6wd708kbipib4ldprfiihqmj4895nifg0bkws4x97majislxk7"))
)
)
))
(native-inputs
(autoconf automake libtool)
)
`(("autoconf" ,autoconf)
("automake" ,automake)
("libtool" ,libtool)))
(inputs
(perl)
)
`(("perl" , perl)))
(build-system gnu-build-system)
(synopsis "X2go")
(description "X2go")
@ -132,22 +142,19 @@
)
)
(define-public glicid-gromacs-openmpi
(package
(inherit gromacs)
(name "glicid-gromacs-openmpi")
(inputs
`(
("openmpi", openmpi)
,@(package-inputs gromacs)
)
)
)
(inputs `(("openmpi", openmpi)
;; ("openssh", openssh) ;; only for tests... disabled now
,@(package-inputs gromacs)))
(build-system cmake-build-system)
(arguments
`(#:configure-flags
(list
"-DGMX_DEVELOPER_BUILD=on" ; Needed to run tests
(list "-DGMX_DEVELOPER_BUILD=on" ; Needed to run tests
;; Unbundling
"-DGMX_USE_LMFIT=EXTERNAL"
"-DGMX_BUILD_OWN_FFTW=off"
@ -163,11 +170,12 @@
"-DGMX_DOUBLE=off"
"-DGMX_OPENMP=on"
"-DGMX_SIMD=AVX2_256"
(string-append "-DTinyXML2_DIR=" (assoc-ref %build-inputs "tinyxml2"))
(string-append "-DTinyXML2_DIR="
(assoc-ref %build-inputs "tinyxml2"))
;; Workaround for cmake/FindSphinx.cmake version parsing that does
;; not understand the guix-wrapped `sphinx-build --version' answer
(string-append "-DSPHINX_EXECUTABLE_VERSION=",(package-version python-sphinx))
)
(string-append "-DSPHINX_EXECUTABLE_VERSION="
,(package-version python-sphinx)))
#:tests? #f
#:phases
(modify-phases %standard-phases
@ -187,17 +195,21 @@
(delete-file-recursively "src/external/tng_io")
(delete-file-recursively "src/external/tinyxml2")
(delete-file-recursively "src/external/googletest")
(copy-recursively (assoc-ref inputs "googletest-source") "src/external/googletest")
(copy-recursively (assoc-ref inputs "googletest-source")
"src/external/googletest")
;; This test warns about the build host hardware, disable
(substitute* "src/gromacs/hardware/tests/hardwaretopology.cpp" (("TEST\\(HardwareTopologyTest, HwlocExecute\\)") "void __guix_disabled()"))
#t
)
)
)
)
(substitute* "src/gromacs/hardware/tests/hardwaretopology.cpp"
(("TEST\\(HardwareTopologyTest, HwlocExecute\\)")
"void __guix_disabled()"))
#t)))))
)
)
(define-public glicid-python-nbxmpp
(package
(inherit python-nbxmpp)
@ -207,24 +219,24 @@
(origin
(method url-fetch)
(uri (pypi-uri "nbxmpp" version))
(sha256 (base32 "0vw5drr077w9ks4crnw6pwa4735ycyjdcm54knc3w4in4x5027wr"))
)
)
)
)
(sha256
(base32
"0vw5drr077w9ks4crnw6pwa4735ycyjdcm54knc3w4in4x5027wr"))))
))
(define-public glicid-specific-hdf5
(package
(inherit hdf5-1.12)
(name "glicid-specific-hdf5")
(native-inputs
`(
; (arguments
; `(#:tests? #f)
; )
(native-inputs `(
("gcc",gcc-11)
("gfortran",gfortran-11)
,@(package-native-inputs hdf5-1.12)
)
)
,@(package-native-inputs hdf5-1.12)))
)
)
@ -244,7 +256,9 @@
(arguments
`(#:make-flags
;; #:make-flags
(list (string-append "PREFIX=" %output)
; (string-append "CC=" ,(cc-for-target))
;; Xft.h #includes <ft2build.h> without ‘freetype2/’. The Makefile
;; works around this by hard-coding /usr/include & $PREFIX.
(string-append "CPPFLAGS=-I"
@ -264,10 +278,12 @@
("flex" ,flex)
("bison" ,bison)
("libxt" ,libxt)))
(synopsis "Motif")
(description "Motif ")
(home-page "https://sourceforge.net/untested")
(license " ")
)
)
@ -313,12 +329,16 @@
("fontconfig", fontconfig)
("gfortran", gfortran)
("libjpeg-turbo", libjpeg-turbo)
;; ("libxmhtml", libxmhtml)
)
)
(synopsis "Xmgrace")
(description "xmgrace")
(home-page "https://sourceforge.net/untested")
(license " ")
)
)
@ -326,6 +346,9 @@
(use-modules (guix download))
(use-modules (gnu packages ruby))
(use-modules (guix build-system ruby))
;(use-modules (guix licenses))
(define-public ruby-asciidoctor-revealjs
(package
@ -343,6 +366,7 @@
'(#:tests? #f))
(propagated-inputs
`(("ruby-asciidoctor" ,ruby-asciidoctor)
; ("ruby-concurrent-ruby" ,ruby-concurrent-ruby)
("ruby-concurrent" ,ruby-concurrent)
("ruby-asciidoctor-kroki", ruby-asciidoctor-kroki)
("ruby-thread-safe" ,ruby-thread-safe)))
@ -380,3 +404,7 @@
(license license:expat)
)
)
;; python-glances is now upstreamed as glances in python-xyz
;;; glicid.scm ends here