From bf6910d7c222717f5a86909658d7417e5125005a Mon Sep 17 00:00:00 2001
From: Yann Dupont <yann.dupont@univ-nantes.fr>
Date: Tue, 20 Dec 2022 18:26:19 +0100
Subject: [PATCH] add glicid python-science

---
 glicid/packages/python-science.scm | 88 ++++++++++++++++++++++++++++++
 1 file changed, 88 insertions(+)
 create mode 100644 glicid/packages/python-science.scm

diff --git a/glicid/packages/python-science.scm b/glicid/packages/python-science.scm
new file mode 100644
index 0000000..a17f4e9
--- /dev/null
+++ b/glicid/packages/python-science.scm
@@ -0,0 +1,88 @@
+(define-module (glicid packages python-science)
+               #:use-module (guix download)
+               #:use-module (guix packages)
+               #:use-module (guix build-system python)
+               #:use-module ((guix licenses) #:prefix license:)
+               #:use-module (gnu packages python-xyz)
+               #:use-module (gnu packages python-crypto)
+               #:use-module (gnu packages python-build)
+               #:use-module (gnu packages check)
+               #:use-module (gnu packages geo)
+               #:use-module (gnu packages python-check)
+)
+
+
+(define-public python-snuggs
+  (package
+    (name "python-snuggs")
+    (version "1.4.7")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "snuggs" version))
+              (sha256
+               (base32
+                "0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h"))))
+    (build-system python-build-system)
+    (propagated-inputs (list python-numpy python-pyparsing))
+    (native-inputs (list python-hypothesis python-pytest))
+    (home-page "https://github.com/mapbox/snuggs")
+    (synopsis "Snuggs are s-expressions for Numpy")
+    (description "Snuggs are s-expressions for Numpy")
+    (license license:expat)))
+
+(define-public python-affine
+  (package
+    (name "python-affine")
+    (version "2.3.1")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "affine" version))
+              (sha256
+               (base32
+                "1l5x66jdrlhaxp9fllkjzfq3bz4xx1a0yknrzycszmks2mkdwxnn"))))
+    (build-system python-build-system)
+    (native-inputs (list python-coveralls python-flake8 python-pydocstyle
+                         python-pytest python-pytest-cov))
+    (home-page "https://github.com/sgillies/affine")
+    (synopsis "Matrices describing affine transformation of the plane.")
+    (description "Matrices describing affine transformation of the plane.")
+    (license license:bsd-3)))
+
+;; un tout petit peu de modifications à faire ici
+
+
+(define-public python-rasterio
+  (package
+    (name "python-rasterio")
+    (version "1.3.4")
+    (source (origin
+              (method url-fetch)
+              (uri (pypi-uri "rasterio" version))
+              (sha256
+               (base32
+                "1a21k86g325ks0vllzn9ry6pf8gch45bs9z9iq5z1v3na90731ss"))))
+    (build-system python-build-system)
+    (arguments
+     '(#:tests? #f))
+
+    (propagated-inputs (list python-affine
+                             python-attrs
+                             python-certifi
+                             python-click
+                             python-click-plugins
+                             python-cligj
+                             python-numpy
+                             python-setuptools
+                             python-snuggs))
+    (native-inputs (list python-boto3
+                         python-hypothesis
+                         python-packaging
+                         python-pytest
+                         python-pytest-cov
+                         python-cython
+                         gdal
+                         python-shapely))
+    (home-page "https://github.com/rasterio/rasterio")
+    (synopsis "Fast and direct raster I/O for use with Numpy and SciPy")
+    (description "Fast and direct raster I/O for use with Numpy and SciPy")
+    (license license:bsd-3)))