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reformatting and cleaning repo

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Jean-François GUILLAUME 2025-02-10 13:12:59 +01:00
parent 263fc568f0
commit dd9a55f327
42 changed files with 10407 additions and 11840 deletions
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7
glicid/packages/algebra.scm
View file

@ -11,10 +11,7 @@
(version "3.3.10") (version "3.3.10")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://www.fftw.org/fftw-" version (uri (string-append "https://www.fftw.org/fftw-" version ".tar.gz"))
".tar.gz")) (sha256 (base32 "0rv4w90b65b2kvjpj8g9bdkl4xqc42q20f5bzpxdrkajk1a35jan"))))
(sha256
(base32
"0rv4w90b65b2kvjpj8g9bdkl4xqc42q20f5bzpxdrkajk1a35jan"))))
(inputs `(("gfortran-toolchain" ,gfortran-toolchain) (inputs `(("gfortran-toolchain" ,gfortran-toolchain)
,@(package-inputs fftw-openmpi))))) ,@(package-inputs fftw-openmpi)))))

27
glicid/packages/backup.scm
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@ -1,17 +1,17 @@
(define-module (glicid packages backup) (define-module (glicid packages backup)
#:use-module (glicid packages crates-imported) #:use-module (glicid packages crates-imported)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix build-system cargo) #:use-module (guix build-system cargo)
#:use-module ((guix licenses) #:prefix license:) #:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages pkg-config) #:use-module (gnu packages pkg-config)
#:use-module (gnu packages compression) #:use-module (gnu packages compression)
#:use-module (gnu packages crates-io) #:use-module (gnu packages crates-io)
#:use-module (gnu packages crates-compression) #:use-module (gnu packages crates-compression)
#:use-module (gnu packages crates-web) #:use-module (gnu packages crates-web)
#:use-module (gnu packages crates-check) #:use-module (gnu packages crates-check)
) )
(define-public rust-rustic-rs-0.9 (define-public rust-rustic-rs-0.9
(package (package
@ -100,8 +100,7 @@
(inputs (list (list zstd "lib"))) (inputs (list (list zstd "lib")))
(home-page "https://rustic.cli.rs/") (home-page "https://rustic.cli.rs/")
(synopsis "rustic - fast, encrypted, deduplicated backups powered by Rust") (synopsis "rustic - fast, encrypted, deduplicated backups powered by Rust")
(description (description "This package provides rustic - fast, encrypted, deduplicated backups powered by Rust.")
"This package provides rustic - fast, encrypted, deduplicated backups powered by Rust.")
(license (list license:asl2.0 license:expat)))) (license (list license:asl2.0 license:expat))))
rust-rustic-rs-0.9 rust-rustic-rs-0.9

16
glicid/packages/base.scm
View file

@ -1,6 +1,9 @@
(define-module (glicid packages base)) (define-module (glicid packages base)
#:use-module (guix packages)
(use-modules (guix packages) (gnu packages cpp) (gnu packages base) (gnu packages pcre)) #:use-module (gnu packages cpp)
#:use-module (gnu packages base)
#:use-module (gnu packages pcre)
)
(define-public grep-glicid (define-public grep-glicid
(package (package
@ -8,9 +11,4 @@
(name "grep-glicid") (name "grep-glicid")
(inputs (list pcre2)) (inputs (list pcre2))
(arguments (arguments
`(#:configure-flags `(#:configure-flags (list "--enable-perl-regexp") ))))
(list "--enable-perl-regexp")
))))
grep-glicid

64
glicid/packages/benchmark.scm
View file

@ -2,17 +2,16 @@
#:use-module (guix build-system gnu) #:use-module (guix build-system gnu)
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix git-download) #:use-module (guix git-download)
#:use-module ((guix licenses) #:use-module ((guix licenses) #:prefix license:)
#:prefix license:)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module ((gnu packages benchmark) #:use-module ((gnu packages benchmark) #:prefix gnu:)
#:prefix gnu:)
#:use-module (gnu packages commencement) #:use-module (gnu packages commencement)
#:use-module (gnu packages compression) #:use-module (gnu packages compression)
#:use-module (gnu packages mpi) #:use-module (gnu packages mpi)
#:use-module (glicid packages mpi) #:use-module (glicid packages mpi)
#:use-module (glicid packages gcc) #:use-module (glicid packages gcc)
#:use-module (glicid utils)) #:use-module (glicid utils)
)
(define-public intel-mpi-benchmarks/openmpi-2021.3 (define-public intel-mpi-benchmarks/openmpi-2021.3
(package (package
@ -26,31 +25,7 @@
(url "https://github.com/intel/mpi-benchmarks") (url "https://github.com/intel/mpi-benchmarks")
(commit (string-append "IMB-v" version)))) (commit (string-append "IMB-v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256 (base32 "04kczch2hlfzbgk929vcxx480kc6raba8rbz246j7d26k1z1zh8h"))))))
(base32
"04kczch2hlfzbgk929vcxx480kc6raba8rbz246j7d26k1z1zh8h"))))))
;(define-public intel-mpi-benchmarks/openmpi-2021.3-libfabric-rdma
; (transform-package (
; (instead-of "openmpi" openmpi-glicid-waves)
; intel-mpi-benchmarks/openmpi-2021.3
; ) "fab+rdma+ucx+psm2")
;)
;(define intel-mpi-benchmark-transform-gcc-11
; (gcc11-instead-of-gcc intel-mpi-benchmarks/openmpi-2021.3-libfabric-rdma)
;)
;(define intel-mpi-benchmarks/openmpi-2021.3-gcc-11
; (package
; (inherit intel-mpi-benchmark-transform-gcc-11)
; (version (string-append (package-version intel-mpi-benchmark-transform-gcc-11) "-gcc-11" ))
; )
;)
;(define-public intel-mpi-benchmarks/openmpi-2021.3-waves
; (transform-package ((instead-of "openmpi" openmpi-glicid-waves)
; intel-mpi-benchmarks/openmpi-2021.3) "waves"))
(define-public stream-benchmarks (define-public stream-benchmarks
(package (package
@ -61,19 +36,15 @@
(uri (git-reference (uri (git-reference
(url "https://github.com/jeffhammond/STREAM.git") (url "https://github.com/jeffhammond/STREAM.git")
(commit "HEAD"))) (commit "HEAD")))
(sha256 (sha256 (base32 "1b5ka2h6rhp2103app6p0vq29y7qixcli9w874hb33y05ggjin8m"))
(base32
"1b5ka2h6rhp2103app6p0vq29y7qixcli9w874hb33y05ggjin8m"))
(file-name (string-append name "-" version "-checkout")))) (file-name (string-append name "-" version "-checkout"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:phases (modify-phases %standard-phases `(#:phases (modify-phases %standard-phases
(delete 'configure) ;no configure (delete 'configure)
(delete 'check) ;no check (delete 'check)
(replace 'install (replace 'install
(lambda* (#:key outputs #:allow-other-keys) (lambda* (#:key outputs #:allow-other-keys)
;; Le Makefile du paquet ne fournit pas de règle « install »
;; alors on le fait nous-mêmes.
(let ((bin (string-append (assoc-ref outputs "out") (let ((bin (string-append (assoc-ref outputs "out")
"/bin"))) "/bin")))
(install-file "stream_c.exe" bin) (install-file "stream_c.exe" bin)
@ -82,10 +53,7 @@
(synopsis "STREAM benchmark") (synopsis "STREAM benchmark")
(description "STREAM benchmark") (description "STREAM benchmark")
(home-page "https://") (home-page "https://")
(license license:gpl2+) ;check… (license license:gpl2+)))
))
;;defined by gricad / PA Boutier
(define-public osu-benchmarks (define-public osu-benchmarks
(package (package
@ -93,21 +61,15 @@
(version "5.8") (version "5.8")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-" version ".tgz"))
"https://mvapich.cse.ohio-state.edu/download/mvapich/osu-micro-benchmarks-" (sha256 (base32 "19a4wg0msipibkxsi8i0c34d07512yfaj2k37dxg5541ysdw690f"))))
version ".tgz"))
(sha256
(base32
"19a4wg0msipibkxsi8i0c34d07512yfaj2k37dxg5541ysdw690f"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:phases (modify-phases %standard-phases `(#:phases (modify-phases %standard-phases
(add-after 'unpack 'setenv (add-after 'unpack 'setenv
(lambda _ (lambda _
(setenv "CC" (setenv "CC" (which "mpicc"))
(which "mpicc")) (setenv "CXX" (which "mpic++")) #t)))))
(setenv "CXX"
(which "mpic++")) #t)))))
(propagated-inputs `(("openmpi" ,openmpi))) (propagated-inputs `(("openmpi" ,openmpi)))
(synopsis "OSU micro benchmarks") (synopsis "OSU micro benchmarks")
(description "OSU micro benchmark for mpi") (description "OSU micro benchmark for mpi")

20
glicid/packages/caddy.scm
View file

@ -12,7 +12,6 @@
#:use-module (gnu packages golang-check) #:use-module (gnu packages golang-check)
#:use-module (gnu packages golang-web) #:use-module (gnu packages golang-web)
#:use-module (gnu packages golang-xyz) #:use-module (gnu packages golang-xyz)
) )
(define %caddy-version "2.9.1") (define %caddy-version "2.9.1")
@ -80,8 +79,7 @@
(url "https://github.com/akavel/rsrc") (url "https://github.com/akavel/rsrc")
(commit (string-append "v" version)))) (commit (string-append "v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256 (base32 "1frdxqdnk923p4245lk0wwqrxsdy8aj2qxl3m0zfgnh02vfz3hs2"))))
(base32 "1frdxqdnk923p4245lk0wwqrxsdy8aj2qxl3m0zfgnh02vfz3hs2"))))
(build-system go-build-system) (build-system go-build-system)
(arguments (arguments
(list (list
@ -102,8 +100,7 @@
(url "https://github.com/josephspurrier/goversioninfo") (url "https://github.com/josephspurrier/goversioninfo")
(commit (string-append "v" version)))) (commit (string-append "v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256 (base32 "02nqhkvsxi69ny64j81x1k142fir2ps68fypi3z2hr4wd3x4i1l9"))))
(base32 "02nqhkvsxi69ny64j81x1k142fir2ps68fypi3z2hr4wd3x4i1l9"))))
(build-system go-build-system) (build-system go-build-system)
(arguments (arguments
(list (list
@ -112,9 +109,8 @@
go-github-com-akavel-rsrc)) go-github-com-akavel-rsrc))
(home-page "https://github.com/josephspurrier/goversioninfo") (home-page "https://github.com/josephspurrier/goversioninfo")
(synopsis "GoVersionInfo") (synopsis "GoVersionInfo")
(description (description "Package goversioninfo creates a syso file which contains Microsoft Version
"Package goversioninfo creates a syso file which contains Microsoft Version Information and an optional icon.")
Information and an optional icon.")
(license license:expat))) (license license:expat)))
(define-public go-github-com-caddyserver-xcaddy (define-public go-github-com-caddyserver-xcaddy
@ -128,8 +124,7 @@ Information and an optional icon.")
(url "https://github.com/caddyserver/xcaddy") (url "https://github.com/caddyserver/xcaddy")
(commit (string-append "v" version)))) (commit (string-append "v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256 (base32 "1452m1wksxmhy00rdkpnh55y8bxyxxcldapvp0fzpsyv82kfmsz1"))))
(base32 "1452m1wksxmhy00rdkpnh55y8bxyxxcldapvp0fzpsyv82kfmsz1"))))
(build-system go-build-system) (build-system go-build-system)
(arguments (arguments
(list (list
@ -139,7 +134,6 @@ Information and an optional icon.")
go-github-com-masterminds-semver-v3)) go-github-com-masterminds-semver-v3))
(home-page "https://github.com/caddyserver/xcaddy") (home-page "https://github.com/caddyserver/xcaddy")
(synopsis "- Custom Caddy Builder") (synopsis "- Custom Caddy Builder")
(description (description "This command line tool and associated Go package makes it easy to make custom
"This command line tool and associated Go package makes it easy to make custom builds of the @@url{https://github.com/caddyserver/caddy,Caddy Web Server}.")
builds of the @@url{https://github.com/caddyserver/caddy,Caddy Web Server}.")
(license license:asl2.0))) (license license:asl2.0)))

620
glicid/packages/clam.scm
View file

@ -1,620 +0,0 @@
(define-module (glicid packages clam)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (gnu packages linux)
#:use-module (gnu packages virtualization)
#:use-module (gnu packages storage)
#:use-module (gnu packages gcc)
#:use-module (glicid packages glicid)
#:use-module (guix build-system python)
#:use-module ((guix licenses)
#:prefix license:)
#:use-module (guix git-download)
#:use-module (gnu packages python)
#:use-module (guix build-system python)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages python-crypto)
#:use-module (gnu packages check)
#:use-module (guix build-system copy)
#:use-module (gnu packages django)
#:use-module (gnu packages time)
#:use-module (gnu packages databases)
#:use-module (gnu packages python-build) ;setup-tools moved here.
)
;(define-public python-pytest-runner-4.5.1
; (package
; (name "python-pytest-runner")
; (version "4.5.1")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "pytest-runner" version))
; (sha256
; (base32
; "1vzilbayx5mznsdm1r258m3616374p6kvhsbj4j6238j9djkvjyi"))))
; (build-system python-build-system)
; (arguments
; '(;; FIXME: The test suite requires 'python-flake8' and 'python-black',
; ;; but that introduces a circular dependency.
; #:tests? #f
; #:phases (modify-phases %standard-phases
; (replace 'check
; (lambda* (#:key tests? #:allow-other-keys)
; (if tests?
; (invoke "pytest" "-vv")
; (format #t "test suite not run~%"))
; #t)))))
; (native-inputs
; `(("python-setuptools-scm" ,python-setuptools-scm)))
; (home-page "https://github.com/pytest-dev/pytest-runner")
; (synopsis "Invoke py.test as a distutils command")
; (description
; "This package provides a @command{pytest-runner} command that
;@file{setup.py} files can use to run tests.")
; (license license:expat)))
;
;(define-public python-keycloak-client-0.2.3
;(package
; (name "python-keycloak-client")
; (version "0.2.3")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "python-keycloak-client" version))
; (sha256
; (base32
; "0gw6wj1rlacfpgbp4b2wyp68ccrh713438qjpv11x6bnlcnf52x3"))))
; (build-system python-build-system) ;; FIXME: Tests require specific "pytest",
; ;; we don't have it for the moment.
; (arguments
; '(#:tests? #f))
;
;
; (propagated-inputs
; `(("python-jose" ,python-jose)
; ("python-pytest-runner-4.5.1", python-pytest-runner-4.5.1)
; ("python-requests" ,python-requests)))
; (native-inputs
; `(("python-bumpversion" ,python-bumpversion)
; ("python-pytest-runner-4.5.1", python-pytest-runner-4.5.1)
; ("python-twine" ,python-twine)))
; (home-page
; "https://github.com/Peter-Slump/python-keycloak-client")
; (synopsis "Install Python Keycloak client.")
; (description "Install Python Keycloak client.")
; (license license:expat))
;
;)
;
;
;(define-public glicid-django-keycloak
; (package
; (name "glicid-django-keycloak")
; (version "v0.1.2-bird")
; (source
; (origin
; (method git-fetch)
; (uri
; (git-reference
; (url "https://oauth2:glpat-RsX2GjsD2WrzXubiJeou@gitlab.univ-nantes.fr/CCIPL/stages/2021/django-keycloak.git") (commit version)
; )
; )
;
; (file-name (git-file-name name version))
; (sha256
; (base32
; "0l380q6z504nndjl15cb5lkghpmm6f3rs4bgwy8sx5s12xz2sbck"
; )
; )
; )
; )
;
; (build-system python-build-system)
; ;; XXX: The git repository has no tags, and the PyPI releases do not
; ;; contain tests.
; (arguments '(#:tests? #f))
; (native-inputs `(("python-keycloak-client" , python-keycloak-client-0.2.3)
; ("python-ecdsa", python-ecdsa)
; ))
; (home-page "https://blabla")
; (synopsis "blabla")
; (description
; "This package provides a single-file minifier for CSS, HTML, and JavaScript.")
; ;; XXX: The README just says "GNU GPL and GNU LGPL and MIT". From
; ;; <https://github.com/juancarlospaco/css-html-js-minify/issues/9> it
; ;; looks like the user can choose a license.
; (license (list license:gpl3+ license:lgpl3+ license:expat))
;
; )
;)
;
;
;(define-public python-django-autocomplete-light
;(package
; (name "python-django-autocomplete-light")
; (version "3.8.2")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "django-autocomplete-light" version))
; (sha256
; (base32
; "145snirk0a7bgcgwisn5fzmb0w4m88zf6r55m2biz3wsnmqymw15"))))
; (build-system python-build-system)
; (arguments '(#:tests? #f)) ; pb with django ?
; (native-inputs `(("python-django", python-django)))
; (propagated-inputs `(("python-six" ,python-six)))
; (home-page
; "http://django-autocomplete-light.rtfd.org")
; (synopsis "Fresh autocompletes for Django")
; (description "Fresh autocompletes for Django")
; (license license:expat))
;)
;
;(define-public python-django-icons
;
;(package
; (name "python-django-icons")
; (version "4.0.0")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "django-icons" version))
; (sha256
; (base32
; "06r0d68qknqa7p44nss6wzdcawakyr7ildgyl6mp5md9xb8klbah"))))
; (build-system python-build-system)
; (arguments '(#:tests? #f)) ; django pb
; (propagated-inputs
; `(("python-django" ,python-django)
; ("python-importlib-metadata"
; ,python-importlib-metadata)))
; (home-page
; "https://github.com/zostera/django-icons")
; (synopsis "Icons for Django")
; (description "Icons for Django")
; (license #f))
;
;)
;
;(define-public python-django-admin-row-actions
;(package
; (name "python-django-admin-row-actions")
; (version "0.0.5")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "django-admin-row-actions" version))
; (sha256
; (base32
; "0rz71a54lj73wfi56flfh5m5fi7ah1cl8fph1h8y386s0am8plpz"))))
; (build-system python-build-system)
;
; (native-inputs `(("python-django", python-django)))
; (arguments '(#:tests? #f)) ; iteration problem
;
; (propagated-inputs `(("python-six" ,python-six)))
; (home-page
; "https://github.com/DjangoAdminHackers/django-admin-row-actions")
; (synopsis "django admin row actions")
; (description "django admin row actions")
; (license #f))
;)
;
;(define-public python-django-bootstrap4
;(package
; (name "python-django-bootstrap4")
; (version "3.0.1")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "django-bootstrap4" version))
; (sha256
; (base32
; "0azcalm95yh713fm1bmsqd73iz53fhmyajsg3fly6mmvffs7zjf5"))))
; (build-system python-build-system)
; (native-inputs `(("python-django", python-django)))
;(arguments '(#:tests? #f)) ; gdal not found.
; (propagated-inputs
; `(("python-beautifulsoup4" ,python-beautifulsoup4)
; ("python-django" ,python-django)
; ("python-importlib-metadata"
; ,python-importlib-metadata)))
; (home-page
; "https://github.com/zostera/django-bootstrap4")
; (synopsis "Bootstrap 4 for Django")
; (description "Bootstrap 4 for Django")
; (license #f))
;
;
;
;)
;
;(define-public python-django-mathfilters
;(package
; (name "python-django-mathfilters")
; (version "1.0.0")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "django-mathfilters" version))
; (sha256
; (base32
; "01sbnrznai6sz4w4qs7ld35039l7q5wh5zawwy1kd2gwdppr5f69"))))
; (build-system python-build-system)
; (native-inputs `(("python-django", python-django)))
;; (arguments '(#:tests? #f)) ; iteration problem
; (home-page
; "https://github.com/dbrgn/django-mathfilters")
; (synopsis
; "A set of simple math filters for Django")
; (description
; "A set of simple math filters for Django")
; (license license:expat))
;
;)
;
;(define-public python-tablib
;(package
; (name "python-tablib")
; (version "3.0.0")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "tablib" version))
; (sha256
; (base32
; "03f1z6jq6rf67gwhbm9ma4rydm8h447a5nh5lcs5l8jg8l4aqg7q"))))
; (build-system python-build-system)
;; (arguments '(#:tests? #f)) ; need setuptools ?
; (native-inputs `(("python-setuptools-scm", python-setuptools-scm)))
; (home-page "https://tablib.readthedocs.io")
; (synopsis
; "Format agnostic tabular data library (XLS, JSON, YAML, CSV)")
; (description
; "Format agnostic tabular data library (XLS, JSON, YAML, CSV)")
; (license license:expat))
;
;
;)
;
;(define-public python-markuppy
;
;(package
; (name "python-markuppy")
; (version "1.14")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "MarkupPy" version))
; (sha256
; (base32
; "0pqdmpxbr8iq22b4css2gz5z6s01ddpzyj25x27kgbs2lp0f5phs"))))
; (build-system python-build-system)
; (home-page
; "https://github.com/tylerbakke/MarkupPy")
; (synopsis "An HTML/XML generator")
; (description "An HTML/XML generator")
; (license license:expat))
;
;
;)
;
;(define-public python-xlwt
;(package
; (name "python-xlwt")
; (version "1.3.0")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "xlwt" version))
; (sha256
; (base32
; "123c2pdamshkq75wwvck8fq0cjq1843xd3x9qaiz2a4vg9qi56f5"))))
; (build-system python-build-system)
; (arguments '(#:tests? #f)) ; code error
; (home-page "http://www.python-excel.org/")
; (synopsis "Library to create spreadsheet files compatible with MS Excel 97/2000/XP/2003 XLS files, on any platform, with Python 2.6, 2.7, 3.3+")
; (description "Library to create spreadsheet files compatible with MS Excel 97/2000/XP/2003 XLS files, on any platform, with Python 2.6, 2.7, 3.3+")
; (license license:bsd-3))
;
;)
;
;(define-public python-django-import-export
;(package
; (name "python-django-import-export")
; (version "2.5.0")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "django-import-export" version))
; (sha256
; (base32
; "0j0gsj18bkkmbn262qj2syla80vncvqn49bllwxvcgw0zhxh1763"))))
; (build-system python-build-system)
; (arguments '(#:tests? #f)) ; django error
; (native-inputs `(("python-markuppy", python-markuppy)
; ("python-odfpy",python-odfpy)
; ("python-xlwt",python-xlwt)
; ("python-xlrd",python-xlrd)
; ("python-pyyaml",python-pyyaml)
; ("python-openpyxl",python-openpyxl)
; ))
; (propagated-inputs
; `(("python-diff-match-patch"
; ,python-diff-match-patch)
; ("python-django" ,python-django)
; ("python-tablib" ,python-tablib)
; ))
; (home-page
; "https://github.com/django-import-export/django-import-export")
; (synopsis
; "Django application and library for importing and exporting data with included admin integration.")
; (description
; "Django application and library for importing and exporting data with included admin integration.")
; (license license:bsd-3))
;
;
;)
;
;(define-public python-django-timezone-field
;(package
; (name "python-django-timezone-field")
; (version "4.1.2")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "django-timezone-field" version))
; (sha256
; (base32
; "1pxrs6mkayr2rqxj8q4wdfrdhw1dnzvwkacajdjy6q6ha8jcdyng"))))
; (build-system python-build-system)
; (arguments '(#:tests? #f)) ; needs rest-framework ?
; (propagated-inputs
; `(("python-django" ,python-django)
; ("python-pytz" ,python-pytz)))
; (home-page
; "http://github.com/mfogel/django-timezone-field/")
; (synopsis
; "A Django app providing database and form fields for pytz timezone objects.")
; (description
; "A Django app providing database and form fields for pytz timezone objects.")
; (license license:bsd-3))
;
;
;)
;
;
;(define-public python-crontab
;(package
; (name "python-crontab")
; (version "2.5.1")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "python-crontab" version))
; (sha256
; (base32
; "0cccrqc10r8781ba81x8r2frs3pl2m4hkm599k5358ak0xr7xgjb"))))
; (build-system python-build-system)
; (arguments '(#:tests? #f)) ; AssertionError: 2 != 0 : Windows shell command not found!
;
; (propagated-inputs
; `(("python-dateutil" ,python-dateutil)))
; (home-page
; "https://gitlab.com/doctormo/python-crontab/")
; (synopsis "Python Crontab API")
; (description "Python Crontab API")
; (license #f))
;
;
;)
;
;(define-public python-click-repl
;
;(package
; (name "python-click-repl")
; (version "0.1.6")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "click-repl" version))
; (sha256
; (base32
; "1mcmz95595nrp4r58spy1ac993db26hk4q97isghbmn4md99vwmr"))))
; (build-system python-build-system)
; (propagated-inputs
; `(("python-click" ,python-click)
; ("python-prompt-toolkit" ,python-prompt-toolkit)
; ("python-six" ,python-six)))
; (home-page
; "https://github.com/untitaker/click-repl")
; (synopsis "REPL plugin for Click")
; (description "REPL plugin for Click")
; (license license:expat))
;)
;
;
;(define-public python-click-didyoumean
;
;(package
; (name "python-click-didyoumean")
; (version "0.0.3")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "click-didyoumean" version))
; (sha256
; (base32
; "1svaza5lpvdbmyrx5xi0riqzq4hb9wnlpqrg6r8zy14pbi42j8hi"))))
; (build-system python-build-system)
; (propagated-inputs
; `(("python-click" ,python-click)))
; (home-page
; "https://github.com/timofurrer/click-didyoumean")
; (synopsis
; "Enable git-like did-you-mean feature in click.")
; (description
; "Enable git-like did-you-mean feature in click.")
; (license #f))
;
;)
;
;(define-public python-pytest-celery
;
;(package
; (name "python-pytest-celery")
; (version "0.0.0")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "pytest-celery" version))
; (sha256
; (base32
; "01pli108qqiiyrn8qsqqabcpazrzj27r7cji9wgglsk76by61l6g"))))
; (build-system python-build-system)
; (propagated-inputs
; `(("python-celery" ,python-celery-5.1.0)))
; (home-page
; "https://github.com/graingert/pytest-celery")
; (synopsis
; "pytest-celery a shim pytest plugin to enable celery.contrib.pytest")
; (description
; "pytest-celery a shim pytest plugin to enable celery.contrib.pytest")
; (license license:bsd-3))
;
;)
;
;(define-public python-celery-5.1.0
;
;(package
; (name "python-celery")
; (version "5.1.0")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "celery" version))
; (sha256
; (base32
; "110ix1h9axnc5dwzyswi1cvypzbr38p1jb1msyf1ikvq8p063w35"))))
; (build-system python-build-system)
; (arguments '(#:tests? #f)) ; circular depedency
; (propagated-inputs
; `(("python-billiard" ,python-billiard)
; ("python-click" ,python-click)
; ("python-click-didyoumean"
; ,python-click-didyoumean)
; ("python-click-plugins" ,python-click-plugins)
; ("python-click-repl" ,python-click-repl)
; ("python-kombu" ,python-kombu)
; ("python-pytz" ,python-pytz)
; ("python-setuptools" ,python-setuptools)
; ("python-vine" ,python-vine)))
; ; (native-inputs
; ; `(("python-pytest-celery" ,python-pytest-celery))) ;; circular depedency !!
; (home-page "http://celeryproject.org")
; (synopsis "Distributed Task Queue.")
; (description "Distributed Task Queue.")
; (license license:bsd-3))
;
;)
;
;(define-public python-django-celery-beat
;
;(package
; (name "python-django-celery-beat")
; (version "2.2.0")
; (source
; (origin
; (method url-fetch)
; (uri (pypi-uri "django-celery-beat" version))
; (sha256
; (base32
; "0hx5ig1g0naagkmh39xbb64hhckd3b3pm12g9z03zig72pxkm8dq"))))
; (build-system python-build-system)
; (arguments '(#:tests? #f)) ; needs much more up to date python-vine
;
; ; (native-inputs `(("python-vine", python-vine)))
; (propagated-inputs
; `(("python-celery" ,python-celery-5.1.0)
; ("python-crontab" ,python-crontab)
; ("python-django" ,python-django)
; ("python-django-timezone-field"
; ,python-django-timezone-field)))
; (home-page
; "https://github.com/celery/django-celery-beat")
; (synopsis "Database-backed Periodic Tasks.")
; (description "Database-backed Periodic Tasks.")
; (license license:bsd-3))
;
;)
;
;(define-public glicid-clam
; (package
; (name "glicid-clam")
; (version "v0.0.1")
; (source
; (origin
; (method git-fetch)
; (uri
; (git-reference
; (url "https://oauth2:glpat-RsX2GjsD2WrzXubiJeou@gitlab.univ-nantes.fr/CCIPL/stages/2021/cluster_account_manager.git") (commit version)
; )
; )
;
; (file-name (git-file-name name version))
; (sha256
; (base32
; "1x8q8wfl3p430dw8cawvfw4a4jjqw80gdg6zm90wmiad1f1lgd6r"
; )
; )
; )
; )
;; (build-system python-build-system)
; (build-system copy-build-system)
; ;; XXX: The git repository has no tags, and the PyPI releases do not
; ;; contain tests.
; (arguments '(
;
;;#:tests? #f
;; #:use-setuptools? #f ; uses custom distutils 'install' command
; #:phases
; (modify-phases %standard-phases
; (add-before 'reset-gzip-timestamps 'make-files-writable
; (lambda* (#:key outputs #:allow-other-keys)
; (let ((out (assoc-ref outputs "out")))
; (for-each make-file-writable
; (find-files out "\\.gz$"))
; #t))))))
;; )
;; )
; (propagated-inputs `(("python-keycloak-client" , python-keycloak-client-0.2.3)
; ("python-ecdsa", python-ecdsa)
; ("python-django", python-django)
; ("python-celery", python-celery-5.1.0)
; ("python-django-auth-ldap",python-django-auth-ldap)
; ("python-django-autocomplete-light",python-django-autocomplete-light)
; ("python-django-admin-row-actions", python-django-admin-row-actions)
; ("python-django-bootstrap4",python-django-bootstrap4)
; ("python-django-icons",python-django-icons)
; ("python-django-mathfilters",python-django-mathfilters)
; ("python-django-import-export",python-django-import-export)
; ("python-django-celery-beat",python-django-celery-beat)
; ("python-psycopg2",python-psycopg2)
; ("python-magic",python-magic)
;
; ))
; (home-page "https://blabla")
; (synopsis "blabla")
; (description
; "This package provides a single-file minifier for CSS, HTML, and JavaScript.")
; ;; XXX: The README just says "GNU GPL and GNU LGPL and MIT". From
; ;; <https://github.com/juancarlospaco/css-html-js-minify/issues/9> it
; ;; looks like the user can choose a license.
; (license (list license:gpl3+ license:lgpl3+ license:expat))
;
; )
;)

16
glicid/packages/cluster.scm
View file

@ -13,12 +13,8 @@
(version "2.2.8") (version "2.2.8")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "http://www.keepalived.org/software/keepalived-" version ".tar.gz"))
"http://www.keepalived.org/software/keepalived-" version (sha256 (base32 "1dhvg9x976k4nnygxyv2gr55jfd88459kgiiqva9bwvl56v2x245"))))))
".tar.gz"))
(sha256
(base32
"1dhvg9x976k4nnygxyv2gr55jfd88459kgiiqva9bwvl56v2x245"))))))
(define-public keepalived-upstream-2.3.1 (define-public keepalived-upstream-2.3.1
@ -28,12 +24,8 @@
(version "2.3.1") (version "2.3.1")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "http://www.keepalived.org/software/keepalived-" version ".tar.gz"))
"http://www.keepalived.org/software/keepalived-" version (sha256 (base32 "18raqq15xxf5hlrqhk39prq9xdfiv9px2nlrs43273lrzndvdx4j"))))))
".tar.gz"))
(sha256
(base32
"18raqq15xxf5hlrqhk39prq9xdfiv9px2nlrs43273lrzndvdx4j"))))))
(define local:keepalived (define local:keepalived

3
glicid/packages/containers.scm
View file

@ -37,5 +37,4 @@
(substitute* "Makefile" (("install: install.bin install.remote install.man install.systemd") "install: install.bin install.remote install.systemd")))))) (substitute* "Makefile" (("install: install.bin install.remote install.man install.systemd") "install: install.bin install.remote install.systemd"))))))
(inputs `(("fuse-overlayfs" ,fuse-overlayfs) ,@(package-inputs gnu:podman))) (inputs `(("fuse-overlayfs" ,fuse-overlayfs) ,@(package-inputs gnu:podman)))
(native-inputs (list bats git go-1.20 pkg-config python)) (native-inputs (list bats git go-1.20 pkg-config python))
(propagated-inputs (list fuse-overlayfs gnu:slirp4netns iptables)) (propagated-inputs (list fuse-overlayfs gnu:slirp4netns iptables))))
))

24
glicid/packages/cpp.scm
View file

@ -1,32 +1,20 @@
(define-module (glicid packages cpp)) (define-module (glicid packages cpp)
#:use-module (guix packages)
(use-modules (guix packages) (gnu packages cpp)) #:use-module (gnu packages cpp)
)
(define-public reproc-with-cpp (define-public reproc-with-cpp
(package (package
(inherit reproc) (inherit reproc)
(name "reproc-with-cpp") (name "reproc-with-cpp")
(arguments (arguments
;; No tests.
`(#:tests? #f `(#:tests? #f
;; Build the shared library instead of a static one. #:configure-flags `("-DBUILD_SHARED_LIBS=1" "-DREPROC++=1")))))
#:configure-flags `("-DBUILD_SHARED_LIBS=1" "-DREPROC++=1")))
))
(define-public reproc-with-cpp-static (define-public reproc-with-cpp-static
(package (package
(inherit reproc) (inherit reproc)
(name "reproc-with-cpp-static") (name "reproc-with-cpp-static")
(arguments (arguments
;; No tests.
`(#:tests? #f `(#:tests? #f
;; Build the shared library instead of a static one. #:configure-flags `("-DREPROC++=1")))))
#:configure-flags `("-DREPROC++=1")))
))

191
glicid/packages/crates-imported.scm
View file

@ -1,23 +1,22 @@
(define-module (glicid packages crates-imported) (define-module (glicid packages crates-imported)
#:use-module (guix packages)
#:use-module (guix packages) #:use-module (guix download)
#:use-module (guix download) #:use-module (guix build-system cargo)
#:use-module (guix build-system cargo) #:use-module ((guix licenses) #:prefix license:)
#:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages crates-io)
#:use-module (gnu packages crates-io) #:use-module (gnu packages crates-apple)
#:use-module (gnu packages crates-apple) #:use-module (gnu packages crates-windows)
#:use-module (gnu packages crates-windows) #:use-module (gnu packages crates-crypto)
#:use-module (gnu packages crates-crypto) #:use-module (gnu packages crates-compression)
#:use-module (gnu packages crates-compression) #:use-module (gnu packages crates-web)
#:use-module (gnu packages crates-web) #:use-module (gnu packages crates-check)
#:use-module (gnu packages crates-check) #:use-module (gnu packages crates-database)
#:use-module (gnu packages crates-database) #:use-module (gnu packages crates-tls)
#:use-module (gnu packages crates-tls) #:use-module (gnu packages crypto)
#:use-module (gnu packages crypto) #:use-module (gnu packages crates-graphics)
#:use-module (gnu packages crates-graphics) #:use-module (gnu packages crates-io)
#:use-module (gnu packages crates-io) #:use-module (gnu packages pkg-config)
#:use-module (gnu packages pkg-config) #:use-module (gnu packages compression))
#:use-module (gnu packages compression))
(define-public rust-ecow-0.2 (define-public rust-ecow-0.2
(package (package
@ -84,7 +83,7 @@
"This crate exposes the Unicode `Script` and `Script_Extension` properties from [UAX #24](http://www.unicode.org/reports/tr24/)") "This crate exposes the Unicode `Script` and `Script_Extension` properties from [UAX #24](http://www.unicode.org/reports/tr24/)")
(description (description
"This crate exposes the Unicode `Script` and `Script_Extension` properties from "This crate exposes the Unicode `Script` and `Script_Extension` properties from
[UAX #24](http://www.unicode.org/reports/tr24/).") [UAX #24](http://www.unicode.org/reports/tr24/).")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
@ -158,12 +157,12 @@
(home-page "https://github.com/rust-lang/flate2-rs") (home-page "https://github.com/rust-lang/flate2-rs")
(synopsis (synopsis
"DEFLATE compression and decompression exposed as Read/BufRead/Write streams. "DEFLATE compression and decompression exposed as Read/BufRead/Write streams.
Supports miniz_oxide and multiple zlib implementations. Supports zlib, gzip, Supports miniz_oxide and multiple zlib implementations. Supports zlib, gzip,
and raw deflate streams.") and raw deflate streams.")
(description (description
"This package provides DEFLATE compression and decompression exposed as Read/@code{BufRead/Write} "This package provides DEFLATE compression and decompression exposed as Read/@code{BufRead/Write}
streams. Supports miniz_oxide and multiple zlib implementations. Supports streams. Supports miniz_oxide and multiple zlib implementations. Supports
zlib, gzip, and raw deflate streams.") zlib, gzip, and raw deflate streams.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-dircmp-0.2 (define-public rust-dircmp-0.2
@ -218,7 +217,7 @@ zlib, gzip, and raw deflate streams.")
(home-page "https://github.com/rhysd/tui-textarea#readme") (home-page "https://github.com/rhysd/tui-textarea#readme")
(synopsis (synopsis
"tui-textarea is a simple yet powerful text editor widget for ratatui and tui-rs. Multi-line "tui-textarea is a simple yet powerful text editor widget for ratatui and tui-rs. Multi-line
text editor can be easily put as part of your TUI application.") text editor can be easily put as part of your TUI application.")
(description (description
"This package provides tui-textarea is a simple yet powerful text editor widget for ratatui and tui-rs. "This package provides tui-textarea is a simple yet powerful text editor widget for ratatui and tui-rs.
Multi-line text editor can be easily put as part of your TUI application.") Multi-line text editor can be easily put as part of your TUI application.")
@ -327,7 +326,7 @@ text editor can be easily put as part of your TUI application.")
"Provides typed variants of Path and PathBuf for Unix and Windows") "Provides typed variants of Path and PathBuf for Unix and Windows")
(description (description
"This package provides typed variants of Path and @code{PathBuf} for Unix and "This package provides typed variants of Path and @code{PathBuf} for Unix and
Windows.") Windows.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-serde-with-macros-3 (define-public rust-serde-with-macros-3
@ -488,7 +487,7 @@ Windows.")
"library for performing Content-Defined Chunking (CDC) on data streams.") "library for performing Content-Defined Chunking (CDC) on data streams.")
(description (description
"This package provides a library for performing Content-Defined Chunking (CDC) on "This package provides a library for performing Content-Defined Chunking (CDC) on
data streams.") data streams.")
(license license:expat))) (license license:expat)))
(define-public rust-runtime-format-0.1 (define-public rust-runtime-format-0.1
@ -533,7 +532,7 @@ data streams.")
"library for extending `Path` and `PathBuf` in order to parse the path which contains dots.") "library for extending `Path` and `PathBuf` in order to parse the path which contains dots.")
(description (description
"This package provides a library for extending `Path` and `@code{PathBuf`} in "This package provides a library for extending `Path` and `@code{PathBuf`} in
order to parse the path which contains dots.") order to parse the path which contains dots.")
(license license:expat))) (license license:expat)))
(define-public rust-pariter-0.5 (define-public rust-pariter-0.5
@ -624,7 +623,7 @@ order to parse the path which contains dots.")
(synopsis "map with C-like enum keys represented internally as an array") (synopsis "map with C-like enum keys represented internally as an array")
(description (description
"This package provides a map with C-like enum keys represented internally as an "This package provides a map with C-like enum keys represented internally as an
array.") array.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-binrw-derive-0.14 (define-public rust-binrw-derive-0.14
@ -673,7 +672,7 @@ array.")
"Rust crate for helping read structs from binary data using ✨macro magic✨") "Rust crate for helping read structs from binary data using ✨macro magic✨")
(description (description
"This package provides a Rust crate for helping read structs from binary data "This package provides a Rust crate for helping read structs from binary data
using ✨macro magic✨.") using ✨macro magic✨.")
(license license:expat))) (license license:expat)))
(define-public rust-aes256ctr-poly1305aes-0.2 (define-public rust-aes256ctr-poly1305aes-0.2
@ -700,10 +699,10 @@ using ✨macro magic✨.")
(home-page "https://github.com/rustic-rs/aes256ctr_poly1305aes") (home-page "https://github.com/rustic-rs/aes256ctr_poly1305aes")
(synopsis (synopsis
"Pure Rust implementation of the AES256CTR-Poly1305AES Authenticated Encryption "Pure Rust implementation of the AES256CTR-Poly1305AES Authenticated Encryption
with optional architecture-specific hardware acceleration.") with optional architecture-specific hardware acceleration.")
(description (description
"This package provides Pure Rust implementation of the AES256CTR-Poly1305AES Authenticated Encryption "This package provides Pure Rust implementation of the AES256CTR-Poly1305AES Authenticated Encryption
with optional architecture-specific hardware acceleration.") with optional architecture-specific hardware acceleration.")
(license (list license:asl2.0 license:expat)))) (license (list license:asl2.0 license:expat))))
(define-public rust-rustic-core-0.7 (define-public rust-rustic-core-0.7
@ -773,7 +772,7 @@ with optional architecture-specific hardware acceleration.")
"rustic_core - library for fast, encrypted, deduplicated backups that powers rustic-rs") "rustic_core - library for fast, encrypted, deduplicated backups that powers rustic-rs")
(description (description
"This package provides rustic_core - library for fast, encrypted, deduplicated backups that powers "This package provides rustic_core - library for fast, encrypted, deduplicated backups that powers
rustic-rs.") rustic-rs.")
(license (list license:asl2.0 license:expat)))) (license (list license:asl2.0 license:expat))))
(define-public rust-tikv-client-0.3 (define-public rust-tikv-client-0.3
@ -919,7 +918,7 @@ rustic-rs.")
"minimal replacement for std::time::Instant that works in WASM for the web and Node.js.") "minimal replacement for std::time::Instant that works in WASM for the web and Node.js.")
(description (description
"This package provides a minimal replacement for std::time::Instant that works in "This package provides a minimal replacement for std::time::Instant that works in
WASM for the web and Node.js.") WASM for the web and Node.js.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public rust-ort-1 (define-public rust-ort-1
@ -956,7 +955,7 @@ WASM for the web and Node.js.")
"safe Rust wrapper for ONNX Runtime 1.20 - Optimize and accelerate machine learning inference & training") "safe Rust wrapper for ONNX Runtime 1.20 - Optimize and accelerate machine learning inference & training")
(description (description
"This package provides a safe Rust wrapper for ONNX Runtime 1.20 - Optimize and "This package provides a safe Rust wrapper for ONNX Runtime 1.20 - Optimize and
accelerate machine learning inference & training.") accelerate machine learning inference & training.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-surrealml-core-0.1 (define-public rust-surrealml-core-0.1
@ -990,7 +989,7 @@ accelerate machine learning inference & training.")
"The core machine learning library for SurrealML that enables SurrealDB to store and load ML models") "The core machine learning library for SurrealML that enables SurrealDB to store and load ML models")
(description (description
"This package provides The core machine learning library for @code{SurrealML} that enables "This package provides The core machine learning library for @code{SurrealML} that enables
@code{SurrealDB} to store and load ML models.") @code{SurrealDB} to store and load ML models.")
(license license:asl2.0))) ;;; YD unknown (license license:asl2.0))) ;;; YD unknown
(define-public rust-vart-0.7 (define-public rust-vart-0.7
@ -1071,7 +1070,7 @@ accelerate machine learning inference & training.")
"low-level, versioned, embedded, ACID-compliant, key-value database for Rust") "low-level, versioned, embedded, ACID-compliant, key-value database for Rust")
(description (description
"This package provides a low-level, versioned, embedded, ACID-compliant, "This package provides a low-level, versioned, embedded, ACID-compliant,
key-value database for Rust.") key-value database for Rust.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public rust-fail-0.4 (define-public rust-fail-0.4
@ -1464,7 +1463,7 @@ key-value database for Rust.")
"Tokio binding for Tungstenite, the Lightweight stream-based WebSocket implementation") "Tokio binding for Tungstenite, the Lightweight stream-based WebSocket implementation")
(description (description
"This package provides Tokio binding for Tungstenite, the Lightweight stream-based @code{WebSocket} "This package provides Tokio binding for Tungstenite, the Lightweight stream-based @code{WebSocket}
implementation.") implementation.")
(license license:expat))) (license license:expat)))
(define-public rust-matchit-0.8 (define-public rust-matchit-0.8
@ -1715,7 +1714,7 @@ implementation.")
"rust implementation of some popular snowball stemming algorithms") "rust implementation of some popular snowball stemming algorithms")
(description (description
"This package provides a rust implementation of some popular snowball stemming "This package provides a rust implementation of some popular snowball stemming
algorithms.") algorithms.")
(license (list license:expat license:bsd-3)))) (license (list license:expat license:bsd-3))))
(define-public rust-rquickjs-macro-0.8 (define-public rust-rquickjs-macro-0.8
@ -1815,8 +1814,8 @@ algorithms.")
"Library for opening and operating on dynamic link libraries (also known as shared objects or shared libraries). This is a modern and more flexible alternative to the already existing libraries like libloading or sharedlib") "Library for opening and operating on dynamic link libraries (also known as shared objects or shared libraries). This is a modern and more flexible alternative to the already existing libraries like libloading or sharedlib")
(description (description
"This package provides Library for opening and operating on dynamic link libraries (also known as "This package provides Library for opening and operating on dynamic link libraries (also known as
shared objects or shared libraries). This is a modern and more flexible shared objects or shared libraries). This is a modern and more flexible
alternative to the already existing libraries like libloading or sharedlib.") alternative to the already existing libraries like libloading or sharedlib.")
(license license:expat))) (license license:expat)))
(define-public rust-rquickjs-core-0.8 (define-public rust-rquickjs-core-0.8
@ -2041,7 +2040,7 @@ alternative to the already existing libraries like libloading or sharedlib.")
"generic object store interface for uniformly interacting with AWS S3, Google Cloud Storage, Azure Blob Storage and local files.") "generic object store interface for uniformly interacting with AWS S3, Google Cloud Storage, Azure Blob Storage and local files.")
(description (description
"This package provides a generic object store interface for uniformly interacting "This package provides a generic object store interface for uniformly interacting
with AWS S3, Google Cloud Storage, Azure Blob Storage and local files.") with AWS S3, Google Cloud Storage, Azure Blob Storage and local files.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-noisy-float-0.2 (define-public rust-noisy-float-0.2
@ -2066,7 +2065,7 @@ with AWS S3, Google Cloud Storage, Azure Blob Storage and local files.")
"Contains floating point types that panic if they are set to an illegal value, such as NaN") "Contains floating point types that panic if they are set to an illegal value, such as NaN")
(description (description
"This package contains floating point types that panic if they are set to an "This package contains floating point types that panic if they are set to an
illegal value, such as @code{NaN}.") illegal value, such as @code{NaN}.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public rust-ndarray-stats-0.5 (define-public rust-ndarray-stats-0.5
@ -2095,7 +2094,7 @@ illegal value, such as @code{NaN}.")
"Statistical routines for ArrayBase, the n-dimensional array data structure provided by ndarray") "Statistical routines for ArrayBase, the n-dimensional array data structure provided by ndarray")
(description (description
"This package provides Statistical routines for @code{ArrayBase}, the n-dimensional array data "This package provides Statistical routines for @code{ArrayBase}, the n-dimensional array data
structure provided by ndarray.") structure provided by ndarray.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-nanoid-0.4 (define-public rust-nanoid-0.4
@ -2118,7 +2117,7 @@ structure provided by ndarray.")
"tiny, secure, URL-friendly, unique string ID generator for Rust.") "tiny, secure, URL-friendly, unique string ID generator for Rust.")
(description (description
"This package provides a tiny, secure, URL-friendly, unique string ID generator "This package provides a tiny, secure, URL-friendly, unique string ID generator
for Rust.") for Rust.")
(license license:expat))) (license license:expat)))
(define-public rust-linfa-linalg-0.1 (define-public rust-linfa-linalg-0.1
@ -2189,7 +2188,7 @@ for Rust.")
"panic hook for `wasm32-unknown-unknown` that logs panics to `console.error`") "panic hook for `wasm32-unknown-unknown` that logs panics to `console.error`")
(description (description
"This package provides a panic hook for `wasm32-unknown-unknown` that logs panics "This package provides a panic hook for `wasm32-unknown-unknown` that logs panics
to `console.error`.") to `console.error`.")
(license (list license:asl2.0 license:expat)))) (license (list license:asl2.0 license:expat))))
(define-public rust-rexie-0.4 (define-public rust-rexie-0.4
@ -2219,7 +2218,7 @@ to `console.error`.")
"Rexie is an easy-to-use, futures based wrapper around IndexedDB that compiles to webassembly") "Rexie is an easy-to-use, futures based wrapper around IndexedDB that compiles to webassembly")
(description (description
"This package provides Rexie is an easy-to-use, futures based wrapper around @code{IndexedDB} that "This package provides Rexie is an easy-to-use, futures based wrapper around @code{IndexedDB} that
compiles to webassembly.") compiles to webassembly.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-indxdb-0.5 (define-public rust-indxdb-0.5
@ -2246,7 +2245,7 @@ compiles to webassembly.")
"key-value database engine abstraction layer for IndexedDB running in WASM") "key-value database engine abstraction layer for IndexedDB running in WASM")
(description (description
"This package provides a key-value database engine abstraction layer for "This package provides a key-value database engine abstraction layer for
@code{IndexedDB} running in WASM.") @code{IndexedDB} running in WASM.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public rust-slotmap-0.4 (define-public rust-slotmap-0.4
@ -2291,7 +2290,7 @@ compiles to webassembly.")
"crate for measuring the total size of object on the stack and heap") "crate for measuring the total size of object on the stack and heap")
(description (description
"This package provides a crate for measuring the total size of object on the "This package provides a crate for measuring the total size of object on the
stack and heap.") stack and heap.")
(license license:expat))) (license license:expat)))
(define-public rust-deepsize-0.2 (define-public rust-deepsize-0.2
@ -2321,7 +2320,7 @@ stack and heap.")
"crate for measuring the total size of object on the stack and heap") "crate for measuring the total size of object on the stack and heap")
(description (description
"This package provides a crate for measuring the total size of object on the "This package provides a crate for measuring the total size of object on the
stack and heap.") stack and heap.")
(license license:expat))) (license license:expat)))
(define-public rust-ext-sort-0.1 (define-public rust-ext-sort-0.1
@ -2398,7 +2397,7 @@ stack and heap.")
(synopsis "library for heap profiling and ad hoc profiling with DHAT.") (synopsis "library for heap profiling and ad hoc profiling with DHAT.")
(description (description
"This package provides a library for heap profiling and ad hoc profiling with "This package provides a library for heap profiling and ad hoc profiling with
DHAT.") DHAT.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-unicode-security-0.1 (define-public rust-unicode-security-0.1
@ -2422,10 +2421,10 @@ DHAT.")
("rust-unicode-script" ,rust-unicode-script-0.5)))) ("rust-unicode-script" ,rust-unicode-script-0.5))))
(home-page "https://github.com/unicode-rs/unicode-security") (home-page "https://github.com/unicode-rs/unicode-security")
(synopsis "Detect possible security problems with Unicode usage (synopsis "Detect possible security problems with Unicode usage
according to Unicode Technical Standard #39 rules.") according to Unicode Technical Standard #39 rules.")
(description (description
"This package provides Detect possible security problems with Unicode usage according to Unicode "This package provides Detect possible security problems with Unicode usage according to Unicode
Technical Standard #39 rules.") Technical Standard #39 rules.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-serde-with-macros-3 (define-public rust-serde-with-macros-3
@ -2668,7 +2667,7 @@ Technical Standard #39 rules.")
"Cedar is a language for defining permissions as policies, which describe who should have access to what") "Cedar is a language for defining permissions as policies, which describe who should have access to what")
(description (description
"This package provides Cedar is a language for defining permissions as policies, which describe who "This package provides Cedar is a language for defining permissions as policies, which describe who
should have access to what.") should have access to what.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public rust-bcrypt-0.15 (define-public rust-bcrypt-0.15
@ -2725,7 +2724,7 @@ should have access to what.")
"An entropy-based password strength estimator, originally for Javascript by Dropbox") "An entropy-based password strength estimator, originally for Javascript by Dropbox")
(description (description
"This package provides An entropy-based password strength estimator, originally for Javascript by "This package provides An entropy-based password strength estimator, originally for Javascript by
Dropbox.") Dropbox.")
(license license:expat))) (license license:expat)))
(define-public rust-proc-static-assertions-next-0.0.1 (define-public rust-proc-static-assertions-next-0.0.1
@ -3115,7 +3114,7 @@ Dropbox.")
"scalable, distributed, collaborative, document-graph database, for the realtime web") "scalable, distributed, collaborative, document-graph database, for the realtime web")
(description (description
"This package provides a scalable, distributed, collaborative, document-graph "This package provides a scalable, distributed, collaborative, document-graph
database, for the realtime web.") database, for the realtime web.")
(license license:asl2.0 ))) ;; YD unknown (license license:asl2.0 ))) ;; YD unknown
(define-public rust-serde-content-0.1 (define-public rust-serde-content-0.1
@ -3205,7 +3204,7 @@ database, for the realtime web.")
"Implements procedural macros for automatic Revision trait implementation") "Implements procedural macros for automatic Revision trait implementation")
(description (description
"This package implements procedural macros for automatic Revision trait "This package implements procedural macros for automatic Revision trait
implementation.") implementation.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public rust-revision-0.10 (define-public rust-revision-0.10
@ -3235,7 +3234,7 @@ implementation.")
"serialization and deserialization implementation which allows for schema-evolution.") "serialization and deserialization implementation which allows for schema-evolution.")
(description (description
"This package provides a serialization and deserialization implementation which "This package provides a serialization and deserialization implementation which
allows for schema-evolution.") allows for schema-evolution.")
(license license:asl2.0))) (license license:asl2.0)))
(define-public rust-reblessive-0.4 (define-public rust-reblessive-0.4
@ -3256,7 +3255,7 @@ allows for schema-evolution.")
(synopsis "small runtime for running deeply nested recursive functions") (synopsis "small runtime for running deeply nested recursive functions")
(description (description
"This package provides a small runtime for running deeply nested recursive "This package provides a small runtime for running deeply nested recursive
functions.") functions.")
(license license:expat))) (license license:expat)))
(define-public rust-pharos-0.5 (define-public rust-pharos-0.5
@ -3670,7 +3669,7 @@ functions.")
"scalable, distributed, collaborative, document-graph database, for the realtime web") "scalable, distributed, collaborative, document-graph database, for the realtime web")
(description (description
"This package provides a scalable, distributed, collaborative, document-graph "This package provides a scalable, distributed, collaborative, document-graph
database, for the realtime web.") database, for the realtime web.")
(license license:asl2.0))) ; YD (license license:asl2.0))) ; YD
(define-public rust-suppaftp-6 (define-public rust-suppaftp-6
@ -3743,7 +3742,7 @@ database, for the realtime web.")
"SQLite driver implementation for SQLx. Not for direct use; see the `sqlx` crate for details") "SQLite driver implementation for SQLx. Not for direct use; see the `sqlx` crate for details")
(description (description
"This package provides SQLite driver implementation for SQLx. Not for direct use; see the `sqlx` crate "This package provides SQLite driver implementation for SQLx. Not for direct use; see the `sqlx` crate
for details.") for details.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-sqlx-postgres-0.8 (define-public rust-sqlx-postgres-0.8
@ -3803,7 +3802,7 @@ for details.")
"PostgreSQL driver implementation for SQLx. Not for direct use; see the `sqlx` crate for details") "PostgreSQL driver implementation for SQLx. Not for direct use; see the `sqlx` crate for details")
(description (description
"This package provides @code{PostgreSQL} driver implementation for SQLx. Not for direct use; see the "This package provides @code{PostgreSQL} driver implementation for SQLx. Not for direct use; see the
`sqlx` crate for details.") `sqlx` crate for details.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-sqlx-mysql-0.8 (define-public rust-sqlx-mysql-0.8
@ -3864,7 +3863,7 @@ for details.")
"MySQL driver implementation for SQLx. Not for direct use; see the `sqlx` crate for details") "MySQL driver implementation for SQLx. Not for direct use; see the `sqlx` crate for details")
(description (description
"This package provides @code{MySQL} driver implementation for SQLx. Not for direct use; see the `sqlx` "This package provides @code{MySQL} driver implementation for SQLx. Not for direct use; see the `sqlx`
crate for details.") crate for details.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-sqlx-macros-core-0.8 (define-public rust-sqlx-macros-core-0.8
@ -3905,7 +3904,7 @@ crate for details.")
"Macro support core for SQLx, the Rust SQL toolkit. Not intended to be used directly") "Macro support core for SQLx, the Rust SQL toolkit. Not intended to be used directly")
(description (description
"This package provides Macro support core for SQLx, the Rust SQL toolkit. Not intended to be used "This package provides Macro support core for SQLx, the Rust SQL toolkit. Not intended to be used
directly.") directly.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-sqlx-macros-0.8 (define-public rust-sqlx-macros-0.8
@ -3955,7 +3954,7 @@ directly.")
"HashMap-like containers that hold their key-value pairs in a user controllable order") "HashMap-like containers that hold their key-value pairs in a user controllable order")
(description (description
"This package provides @code{HashMap-like} containers that hold their key-value pairs in a user "This package provides @code{HashMap-like} containers that hold their key-value pairs in a user
controllable order.") controllable order.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-sqlx-core-0.8 (define-public rust-sqlx-core-0.8
@ -4045,8 +4044,8 @@ controllable order.")
"🧰 The Rust SQL Toolkit. An async, pure Rust SQL crate featuring compile-time checked queries without a DSL. Supports PostgreSQL, MySQL, and SQLite") "🧰 The Rust SQL Toolkit. An async, pure Rust SQL crate featuring compile-time checked queries without a DSL. Supports PostgreSQL, MySQL, and SQLite")
(description (description
"This package provides 🧰 The Rust SQL Toolkit. An async, pure Rust SQL crate featuring compile-time "This package provides 🧰 The Rust SQL Toolkit. An async, pure Rust SQL crate featuring compile-time
checked queries without a DSL. Supports @code{PostgreSQL}, @code{MySQL}, and checked queries without a DSL. Supports @code{PostgreSQL}, @code{MySQL}, and
SQLite.") SQLite.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-snowflaked-1 (define-public rust-snowflaked-1
@ -5345,7 +5344,7 @@ SQLite.")
"library for querying the version of the rustc compiler used in runtime") "library for querying the version of the rustc compiler used in runtime")
(description (description
"This package provides a library for querying the version of the rustc compiler "This package provides a library for querying the version of the rustc compiler
used in runtime.") used in runtime.")
(license license:expat))) (license license:expat)))
(define-public rust-reqwest-0.12 (define-public rust-reqwest-0.12
@ -5440,7 +5439,7 @@ used in runtime.")
"Tool for helping to find SSL certificate locations on the system for OpenSSL") "Tool for helping to find SSL certificate locations on the system for OpenSSL")
(description (description
"This package provides Tool for helping to find SSL certificate locations on the system for "This package provides Tool for helping to find SSL certificate locations on the system for
@code{OpenSSL}.") @code{OpenSSL}.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-mongodb-internal-macros-3 (define-public rust-mongodb-internal-macros-3
@ -5625,7 +5624,7 @@ used in runtime.")
"Allows the exporting and importing of the tokens of items across module, file, and crate boundaries") "Allows the exporting and importing of the tokens of items across module, file, and crate boundaries")
(description (description
"This package provides Allows the exporting and importing of the tokens of items across module, file, "This package provides Allows the exporting and importing of the tokens of items across module, file,
and crate boundaries.") and crate boundaries.")
(license license:expat))) (license license:expat)))
(define-public rust-hickory-resolver-0.24 (define-public rust-hickory-resolver-0.24
@ -5668,10 +5667,10 @@ and crate boundaries.")
"Hickory DNS is a safe and secure DNS library. This Resolver library uses the Client library to perform all DNS queries. The Resolver is intended to be a high-level library for any DNS record resolution see Resolver and AsyncResolver for supported resolution types. The Client can be used for other queries.") "Hickory DNS is a safe and secure DNS library. This Resolver library uses the Client library to perform all DNS queries. The Resolver is intended to be a high-level library for any DNS record resolution see Resolver and AsyncResolver for supported resolution types. The Client can be used for other queries.")
(description (description
"This package provides Hickory DNS is a safe and secure DNS library. This Resolver library uses the "This package provides Hickory DNS is a safe and secure DNS library. This Resolver library uses the
Client library to perform all DNS queries. The Resolver is intended to be a Client library to perform all DNS queries. The Resolver is intended to be a
high-level library for any DNS record resolution see Resolver and high-level library for any DNS record resolution see Resolver and
@code{AsyncResolver} for supported resolution types. The Client can be used for @code{AsyncResolver} for supported resolution types. The Client can be used for
other queries.") other queries.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-hickory-proto-0.24 (define-public rust-hickory-proto-0.24
@ -5730,7 +5729,7 @@ other queries.")
"Hickory DNS is a safe and secure DNS library. This is the foundational DNS protocol library for all Hickory DNS projects.") "Hickory DNS is a safe and secure DNS library. This is the foundational DNS protocol library for all Hickory DNS projects.")
(description (description
"This package provides Hickory DNS is a safe and secure DNS library. This is the foundational DNS "This package provides Hickory DNS is a safe and secure DNS library. This is the foundational DNS
protocol library for all Hickory DNS projects.") protocol library for all Hickory DNS projects.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-mongodb-3 (define-public rust-mongodb-3
@ -5843,7 +5842,7 @@ protocol library for all Hickory DNS projects.")
(synopsis "fast and concurrent cache library inspired by Java Caffeine") (synopsis "fast and concurrent cache library inspired by Java Caffeine")
(description (description
"This package provides a fast and concurrent cache library inspired by Java "This package provides a fast and concurrent cache library inspired by Java
Caffeine.") Caffeine.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-mime-guess-2 (define-public rust-mime-guess-2
@ -5868,7 +5867,7 @@ Caffeine.")
"simple crate for detection of a file's MIME type by its extension.") "simple crate for detection of a file's MIME type by its extension.")
(description (description
"This package provides a simple crate for detection of a file's MIME type by its "This package provides a simple crate for detection of a file's MIME type by its
extension.") extension.")
(license license:expat))) (license license:expat)))
(define-public rust-metrics-0.24 (define-public rust-metrics-0.24
@ -5982,7 +5981,7 @@ extension.")
"build dependency to build native libraries that use configure&make-style build systems") "build dependency to build native libraries that use configure&make-style build systems")
(description (description
"This package provides a build dependency to build native libraries that use "This package provides a build dependency to build native libraries that use
configure&make-style build systems.") configure&make-style build systems.")
(license license:expat))) (license license:expat)))
(define-public rust-protobuf-src-1 (define-public rust-protobuf-src-1
@ -6049,7 +6048,7 @@ configure&make-style build systems.")
"macro to create types that implement fast finite field arithmetic.") "macro to create types that implement fast finite field arithmetic.")
(description (description
"This package provides a macro to create types that implement fast finite field "This package provides a macro to create types that implement fast finite field
arithmetic.") arithmetic.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-g2p-1 (define-public rust-g2p-1
@ -6073,7 +6072,7 @@ arithmetic.")
"crate to create types that implement fast finite field arithmetic.") "crate to create types that implement fast finite field arithmetic.")
(description (description
"This package provides a crate to create types that implement fast finite field "This package provides a crate to create types that implement fast finite field
arithmetic.") arithmetic.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-fs-hdfs3-0.1 (define-public rust-fs-hdfs3-0.1
@ -6199,7 +6198,7 @@ arithmetic.")
"simple spinlock crate based on the abstractions provided by `lock_api`.") "simple spinlock crate based on the abstractions provided by `lock_api`.")
(description (description
"This package provides a simple spinlock crate based on the abstractions provided "This package provides a simple spinlock crate based on the abstractions provided
by `lock_api`.") by `lock_api`.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-prost-types-0.11 (define-public rust-prost-types-0.11
@ -6411,7 +6410,7 @@ by `lock_api`.")
"`try_map` and `flip` methods for `Option`. These allow more ergonomic error handling when mapping functions that return `Result` over `Option`") "`try_map` and `flip` methods for `Option`. These allow more ergonomic error handling when mapping functions that return `Result` over `Option`")
(description (description
"This package provides `try_map` and `flip` methods for `Option`. These allow more ergonomic error "This package provides `try_map` and `flip` methods for `Option`. These allow more ergonomic error
handling when mapping functions that return `Result` over `Option`.") handling when mapping functions that return `Result` over `Option`.")
(license (list license:asl2.0 license:expat)))) (license (list license:asl2.0 license:expat))))
(define-public rust-foundationdb-macros-0.3 (define-public rust-foundationdb-macros-0.3
@ -6534,7 +6533,7 @@ handling when mapping functions that return `Result` over `Option`.")
(synopsis "realtime-safe single-producer single-consumer ring buffer") (synopsis "realtime-safe single-producer single-consumer ring buffer")
(description (description
"This package provides a realtime-safe single-producer single-consumer ring "This package provides a realtime-safe single-producer single-consumer ring
buffer.") buffer.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-minstant-0.1 (define-public rust-minstant-0.1
@ -6559,7 +6558,7 @@ buffer.")
"drop-in replacement for `std::time::Instant` that measures time with high performance and high accuracy powered by TSC") "drop-in replacement for `std::time::Instant` that measures time with high performance and high accuracy powered by TSC")
(description (description
"This package provides a drop-in replacement for `std::time::Instant` that "This package provides a drop-in replacement for `std::time::Instant` that
measures time with high performance and high accuracy powered by TSC.") measures time with high performance and high accuracy powered by TSC.")
(license license:expat))) (license license:expat)))
(define-public rust-fastrace-macro-0.7 (define-public rust-fastrace-macro-0.7
@ -6739,7 +6738,7 @@ measures time with high performance and high accuracy powered by TSC.")
"Safe implementation for hardware accelerated CRC32C instructions with software fallback") "Safe implementation for hardware accelerated CRC32C instructions with software fallback")
(description (description
"This package provides Safe implementation for hardware accelerated CRC32C instructions with software "This package provides Safe implementation for hardware accelerated CRC32C instructions with software
fallback.") fallback.")
(license (list license:asl2.0 license:expat)))) (license (list license:asl2.0 license:expat))))
(define-public rust-compio-tls-0.3 (define-public rust-compio-tls-0.3
@ -6975,12 +6974,12 @@ fallback.")
(home-page "https://github.com/alexcrichton/scoped-tls") (home-page "https://github.com/alexcrichton/scoped-tls")
(synopsis (synopsis
"Library implementation of the standard library's old `scoped_thread_local!` "Library implementation of the standard library's old `scoped_thread_local!`
macro for providing scoped access to thread local storage (TLS) so any type can macro for providing scoped access to thread local storage (TLS) so any type can
be stored into TLS.") be stored into TLS.")
(description (description
"This package provides Library implementation of the standard library's old `scoped_thread_local!` "This package provides Library implementation of the standard library's old `scoped_thread_local!`
macro for providing scoped access to thread local storage (TLS) so any type can macro for providing scoped access to thread local storage (TLS) so any type can
be stored into TLS.") be stored into TLS.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-compio-runtime-0.5 (define-public rust-compio-runtime-0.5
@ -7674,7 +7673,7 @@ be stored into TLS.")
"flexible, simple to use, immutable, clone-efficient `String` replacement for Rust") "flexible, simple to use, immutable, clone-efficient `String` replacement for Rust")
(description (description
"This package provides a flexible, simple to use, immutable, clone-efficient "This package provides a flexible, simple to use, immutable, clone-efficient
`String` replacement for Rust.") `String` replacement for Rust.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-wasix-0.12 (define-public rust-wasix-0.12
@ -8668,7 +8667,7 @@ be stored into TLS.")
"Provides an easy, fast, cross-platform way to retrieve the memory page size") "Provides an easy, fast, cross-platform way to retrieve the memory page size")
(description (description
"This package provides an easy, fast, cross-platform way to retrieve the memory "This package provides an easy, fast, cross-platform way to retrieve the memory
page size.") page size.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-fuser-0.13 (define-public rust-fuser-0.13
@ -8722,7 +8721,7 @@ page size.")
"higher-level FUSE filesystem library with multi-threading and inode->path translation.") "higher-level FUSE filesystem library with multi-threading and inode->path translation.")
(description (description
"This package provides a higher-level FUSE filesystem library with "This package provides a higher-level FUSE filesystem library with
multi-threading and inode->path translation.") multi-threading and inode->path translation.")
(license (list license:expat license:asl2.0)))) (license (list license:expat license:asl2.0))))
(define-public rust-derive-more-impl-1 (define-public rust-derive-more-impl-1
@ -9226,10 +9225,10 @@ multi-threading and inode->path translation.")
(home-page "https://github.com/iqlusioninc/abscissa/") (home-page "https://github.com/iqlusioninc/abscissa/")
(synopsis (synopsis
"Application microframework with support for command-line option parsing, "Application microframework with support for command-line option parsing,
configuration, error handling, logging, and terminal interactions. configuration, error handling, logging, and terminal interactions.
This crate contains the framework's core functionality.") This crate contains the framework's core functionality.")
(description (description
"This package provides Application microframework with support for command-line option parsing, "This package provides Application microframework with support for command-line option parsing,
configuration, error handling, logging, and terminal interactions. This crate configuration, error handling, logging, and terminal interactions. This crate
contains the framework's core functionality.") contains the framework's core functionality.")
(license license:asl2.0))) (license license:asl2.0)))

20
glicid/packages/cups.scm
View file

@ -7,7 +7,7 @@
#:use-module (gnu packages bash) #:use-module (gnu packages bash)
#:use-module (gnu packages compression) #:use-module (gnu packages compression)
#:use-module (gnu packages crypto) #:use-module (gnu packages crypto)
#:use-module (gnu packages fonts) ; font-dejavu #:use-module (gnu packages fonts)
#:use-module (gnu packages fontutils) #:use-module (gnu packages fontutils)
#:use-module (gnu packages ghostscript) #:use-module (gnu packages ghostscript)
#:use-module (gnu packages glib) #:use-module (gnu packages glib)
@ -39,8 +39,6 @@
#:use-module (srfi srfi-1) #:use-module (srfi srfi-1)
#:use-module (ice-9 match) #:use-module (ice-9 match)
#:use-module (gnu packages cups) #:use-module (gnu packages cups)
#:use-module (gnu packages) #:use-module (gnu packages)
#:use-module (gnu packages algebra) #:use-module (gnu packages algebra)
#:use-module (gnu packages python-xyz) #:use-module (gnu packages python-xyz)
@ -50,7 +48,7 @@
#:use-module (gnu packages tls) #:use-module (gnu packages tls)
#:use-module (guix build-system gnu) #:use-module (guix build-system gnu)
#:use-module (guix build-system python) #:use-module (guix build-system python)
) )
(define-public gutenprint (define-public gutenprint
@ -60,11 +58,8 @@
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (string-append "mirror://sourceforge/gimp-print/" name "-" (uri (string-append "mirror://sourceforge/gimp-print/" name "-" (version-major+minor version) "/" version "/" name "-" version ".tar.xz"))
(version-major+minor version) "/" version "/" (sha256 (base32 "0fq2y9sx37d342fihp1ys9kf4sr2j5nc1kl33j9sirmqs80sfi6v"))))
name "-" version ".tar.xz"))
(sha256
(base32 "0fq2y9sx37d342fihp1ys9kf4sr2j5nc1kl33j9sirmqs80sfi6v"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:test-target "check-parallel" `(#:test-target "check-parallel"
@ -74,8 +69,7 @@
"--enable-cups-1_2-enhancements") "--enable-cups-1_2-enhancements")
#:phases #:phases
(modify-phases %standard-phases (modify-phases %standard-phases
(delete 'check) ; works, but takes ages ! (delete 'check)
(add-before 'configure 'fix-paths (add-before 'configure 'fix-paths
(lambda* (#:key outputs native-inputs #:allow-other-keys) (lambda* (#:key outputs native-inputs #:allow-other-keys)
(substitute* "Makefile.in" (substitute* "Makefile.in"
@ -101,8 +95,8 @@
(list cups-minimal)) (list cups-minimal))
(synopsis "Printer drivers for CUPS") (synopsis "Printer drivers for CUPS")
(description "This package provides printer drivers for CUPS. (description "This package provides printer drivers for CUPS.
This project also maintains an enhanced Print plug-in for GIMP 2.x from This project also maintains an enhanced Print plug-in for GIMP 2.x from
the same code base. This driver supports widespread inkjet printers by major vendors, the same code base. This driver supports widespread inkjet printers by major vendors,
including Canon, Epson, Fujitsu, SONY, @dots{}") including Canon, Epson, Fujitsu, SONY, @dots{}")
(home-page "http://gimp-print.sourceforge.net/") (home-page "http://gimp-print.sourceforge.net/")
(license license:gpl2+))) (license license:gpl2+)))

1
glicid/packages/databases.scm
View file

@ -29,7 +29,6 @@
("pkg-config" ,pkg-config) ("pkg-config" ,pkg-config)
,@(package-inputs gnu:postgresql-15))))) ,@(package-inputs gnu:postgresql-15)))))
; not yet public as the checks fails on jsonb_jsonpath
(define postgresql-17 (define postgresql-17
(package (package
(inherit postgresql-16) (inherit postgresql-16)

15
glicid/packages/dns.scm
View file

@ -36,8 +36,7 @@
(arguments (arguments
`( `(
#:configure-flags #:configure-flags
(list "--with-sysroot=/" (list "--with-sysroot=/" (string-append "--with-pkcs11=" (assoc-ref %build-inputs "p11-kit")))
(string-append "--with-pkcs11=" (assoc-ref %build-inputs "p11-kit")))
#:phases #:phases
(modify-phases %standard-phases (modify-phases %standard-phases
(add-after 'strip 'move-to-utils (add-after 'strip 'move-to-utils
@ -103,13 +102,13 @@
requests. Hickory DNS is based on the Tokio and Futures libraries, which means requests. Hickory DNS is based on the Tokio and Futures libraries, which means
it should be easily integrated into other software that also use those it should be easily integrated into other software that also use those
libraries. libraries.
") ")
(description (description
"Hickory DNS is a safe and secure DNS server with DNSSEC support. Eventually "Hickory DNS is a safe and secure DNS server with DNSSEC support. Eventually
this could be a replacement for BIND9. The DNSSEC support allows for live this could be a replacement for BIND9. The DNSSEC support allows for live
signing of all records, in it does not currently support records signed offline. signing of all records, in it does not currently support records signed offline.
The server supports dynamic DNS with SIG0 authenticated requests. Hickory DNS The server supports dynamic DNS with SIG0 authenticated requests. Hickory DNS
is based on the Tokio and Futures libraries, which means it should be easily is based on the Tokio and Futures libraries, which means it should be easily
integrated into other software that also use those libraries.") integrated into other software that also use those libraries.")
(license (list license:expat license:asl2.0) (license (list license:expat license:asl2.0)
))) )))

11
glicid/packages/fabric-management.scm
View file

@ -1,11 +0,0 @@
(define-module (glicid packages fabric-management)
#:use-module (guix download)
#:use-module (guix packages)
#:use-module ((gnu packages fabric-management)
#:prefix gnu:)
#:use-module (glicid packages linux)
#:use-module (glicid utils)
)
;; obsolete packages deleted

62
glicid/packages/file-systems.scm
View file

@ -1,6 +1,5 @@
(define-module (glicid packages file-systems) (define-module (glicid packages file-systems)
#:use-module ((guix licenses) #:use-module ((guix licenses) #:prefix license:)
#:prefix license:)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix git-download) #:use-module (guix git-download)
@ -18,7 +17,6 @@
#:use-module (gnu packages flex) #:use-module (gnu packages flex)
#:use-module (gnu packages flex) #:use-module (gnu packages flex)
#:use-module (gnu packages pkg-config) #:use-module (gnu packages pkg-config)
) )
(define-public autofs-glicid (define-public autofs-glicid
@ -27,33 +25,17 @@
(version "5.1.8") (version "5.1.8")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "mirror://kernel.org/linux/daemons/autofs/" (uri (string-append "mirror://kernel.org/linux/daemons/autofs/" "v" (version-major version) "/" "autofs-" version ".tar.xz"))
"v" (sha256 (base32 "1zf0fgf6kr9amxq5amlgsp1v13sizwl3wvx2xl7b4r2nhmci0gdk"))))
(version-major version)
"/"
"autofs-"
version
".tar.xz"))
(sha256
(base32
"1zf0fgf6kr9amxq5amlgsp1v13sizwl3wvx2xl7b4r2nhmci0gdk"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:configure-flags (list "--enable-ignore-busy" ;during shutdown `(#:configure-flags (list "--enable-ignore-busy"
"--enable-sloppy-mount" ;support mount(8) -s "--enable-sloppy-mount"
"--with-libtirpc" "--with-libtirpc"
(string-append "--with-openldap=" (string-append "--with-openldap=" (assoc-ref %build-inputs "openldap"))
(assoc-ref %build-inputs (string-append "--with-sasl=" (assoc-ref %build-inputs "cyrus-sasl"))
"openldap"))
(string-append "--with-sasl="
(assoc-ref %build-inputs
"cyrus-sasl"))
;; "HAVE_SSS_AUTOFS=1" ; required to make sssldir click
;; (string-append "sssldir="
;; (assoc-ref %build-inputs "sssd")
;; "/lib/sssd/modules")
) )
#:tests? #f ;no test suite #:tests? #f
#:phases (modify-phases %standard-phases #:phases (modify-phases %standard-phases
(add-before 'configure 'fix-hard-coded-search-path (add-before 'configure 'fix-hard-coded-search-path
(lambda _ (lambda _
@ -67,33 +49,27 @@
(("^AUTOFS_LIB_LINK.*=" match) (("^AUTOFS_LIB_LINK.*=" match)
(string-append match " -Wl,-rpath=" out "/lib")))))) (string-append match " -Wl,-rpath=" out "/lib"))))))
(add-before 'install 'omit-obsolete-lookup_nis.so-link (add-before 'install 'omit-obsolete-lookup_nis.so-link
;; Building lookup_yp.so depends on $(YPCLNT) but this doesn't,
;; leading to a make error. Since it's broken, comment it out.
(lambda _ (lambda _
(substitute* "modules/Makefile" (substitute* "modules/Makefile"
(("ln -fs lookup_yp.so" match) (("ln -fs lookup_yp.so" match)
(string-append "# " match)))))))) (string-append "# " match))))))))
(native-inputs (list bison flex pkg-config rpcsvc-proto)) (native-inputs (list bison flex pkg-config rpcsvc-proto))
(inputs (list cyrus-sasl (inputs (list cyrus-sasl
e2fsprogs ;for e[234]fsck e2fsprogs
libtirpc libtirpc
libxml2 ;needed for LDAP, SASL libxml2
mit-krb5 ;needed for LDAP, SASL mit-krb5
nfs-utils ;for mount.nfs nfs-utils
openldap openldap
openssl ;needed for SASL openssl
;; sssd util-linux))
util-linux)) ;for mount, umount
;; XXX A directory index is the closest thing this has to a home page.
(home-page "https://www.kernel.org/pub/linux/daemons/autofs/") (home-page "https://www.kernel.org/pub/linux/daemons/autofs/")
(synopsis "Kernel-based automounter for Linux") (synopsis "Kernel-based automounter for Linux")
(description (description
"Autofs is a kernel-based automounter for use with the Linux autofs4 "Autofs is a kernel-based automounter for use with the Linux autofs4
module. It automatically mounts selected file systems when they are used and module. It automatically mounts selected file systems when they are used and
unmounts them after a set period of inactivity. This provides unmounts them after a set period of inactivity. This provides
centrally-managed, consistent file names for users and applications, even in a centrally-managed, consistent file names for users and applications, even in a
large and/or frequently changing (network) environment.") large and/or frequently changing (network) environment.")
;; fedfs/ is GPL-2-only but not built. (license (list license:bsd-3
(license (list license:bsd-3 ;modules/cyrus-sasl.c
license:gpl2+)))) license:gpl2+))))
; the rest

44
glicid/packages/gcc.scm
View file

@ -1,25 +1,20 @@
(define-module (glicid packages gcc) (define-module (glicid packages gcc)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (gnu packages commencement) ; for make-gcc-toolchain #:use-module (gnu packages commencement)
#:use-module (gnu packages gcc) ; for gcc-11 #:use-module (gnu packages gcc)
) )
;; beware : access to internal functions… this is probably not the right way to do it …
(define custom-gcc (define custom-gcc
(@@ (gnu packages gcc) custom-gcc)) (@@ (gnu packages gcc) custom-gcc))
(define %generic-search-paths (define %generic-search-paths
(@@ (gnu packages gcc) %generic-search-paths)) (@@ (gnu packages gcc) %generic-search-paths))
;; now define-public normally hiden versions
(define-public gfortran-12 (define-public gfortran-12
(hidden-package (custom-gcc gcc-12 "gfortran" (hidden-package (custom-gcc gcc-12 "gfortran" '("fortran") %generic-search-paths)))
'("fortran") %generic-search-paths)))
(define make-gcc-toolchain (define make-gcc-toolchain
(@@ (gnu packages commencement) make-gcc-toolchain )) ; discouraged, find better alternative (@@ (gnu packages commencement) make-gcc-toolchain ))
(define-public gfortran-toolchain-12 (define-public gfortran-toolchain-12
(package (package
@ -30,12 +25,9 @@
fortran lang development to be installed in user profiles. This includes fortran lang development to be installed in user profiles. This includes
fortran, as well as libc (headers and binaries, plus debugging symbols fortran, as well as libc (headers and binaries, plus debugging symbols
in the @code{debug} output), and binutils."))) in the @code{debug} output), and binutils.")))
(define-public gfortran-13 (define-public gfortran-13
(hidden-package (custom-gcc gcc-13 "gfortran" (hidden-package (custom-gcc gcc-13 "gfortran"
'("fortran") %generic-search-paths))) '("fortran") %generic-search-paths)))
(define-public gfortran-toolchain-13 (define-public gfortran-toolchain-13
(package (package
(inherit (make-gcc-toolchain gfortran-13)) (inherit (make-gcc-toolchain gfortran-13))
@ -45,13 +37,9 @@
fortran lang development to be installed in user profiles. This includes fortran lang development to be installed in user profiles. This includes
fortran, as well as libc (headers and binaries, plus debugging symbols fortran, as well as libc (headers and binaries, plus debugging symbols
in the @code{debug} output), and binutils."))) in the @code{debug} output), and binutils.")))
(define-public gfortran-14 (define-public gfortran-14
(hidden-package (custom-gcc gcc-14 "gfortran" (hidden-package (custom-gcc gcc-14 "gfortran"
'("fortran") %generic-search-paths))) '("fortran") %generic-search-paths)))
(define-public gfortran-toolchain-14 (define-public gfortran-toolchain-14
(package (package
(inherit (make-gcc-toolchain gfortran-14)) (inherit (make-gcc-toolchain gfortran-14))
@ -62,9 +50,6 @@
fortran, as well as libc (headers and binaries, plus debugging symbols fortran, as well as libc (headers and binaries, plus debugging symbols
in the @code{debug} output), and binutils."))) in the @code{debug} output), and binutils.")))
(define-public gfortran-11 (define-public gfortran-11
(hidden-package (custom-gcc gcc-11 "gfortran" (hidden-package (custom-gcc gcc-11 "gfortran"
'("fortran") %generic-search-paths))) '("fortran") %generic-search-paths)))
@ -79,23 +64,6 @@
fortran, as well as libc (headers and binaries, plus debugging symbols fortran, as well as libc (headers and binaries, plus debugging symbols
in the @code{debug} output), and binutils."))) in the @code{debug} output), and binutils.")))
;; gfortran@10 and gfortran-toolchain@10 are defaults
;(define-public gfortran-10
; (hidden-package (custom-gcc gcc-10 "gfortran"
; '("fortran") %generic-search-paths)))
;(define-public gfortran-toolchain-10
; (package
; (inherit (make-gcc-toolchain gfortran-10))
; (synopsis "Complete GCC tool chain for fortran lang development")
; (description
; "This package provides a complete GCC tool chain for
; fortran lang development to be installed in user profiles. This includes
; fortran, as well as libc (headers and binaries, plus debugging symbols
; in the @code{debug} output), and binutils.")))
(define-public gfortran-9 (define-public gfortran-9
(hidden-package (custom-gcc gcc-9 "gfortran" (hidden-package (custom-gcc gcc-9 "gfortran"
'("fortran") %generic-search-paths))) '("fortran") %generic-search-paths)))

236
glicid/packages/glicid.scm
View file

@ -2,104 +2,28 @@
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix git-download) #:use-module (guix git-download)
#:use-module (guix build-system gnu)
#:use-module (guix build-system cmake) #:use-module (guix build-system cmake)
;; #:use-module (guix licenses) #:use-module (guix build-system gnu)
#:use-module (gnu packages gawk)
#:use-module (gnu packages gcc)
#:use-module (gnu packages commencement)
#:use-module (guix build-system python) #:use-module (guix build-system python)
#:use-module ((guix licenses) #:use-module (guix build-system ruby)
#:prefix license:)
#:use-module ((guix utils)
#:select (target-64bit?))
#:use-module (gnu packages)
#:use-module (gnu packages admin)
#:use-module (gnu packages autotools) #:use-module (gnu packages autotools)
#:use-module (gnu packages base) #:use-module (gnu packages bison)
#:use-module (gnu packages freeipmi) #:use-module (gnu packages chemistry)
#:use-module (gnu packages linux) #:use-module (gnu packages flex)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages gcc)
#:use-module (gnu packages image)
#:use-module (gnu packages messaging)
#:use-module (gnu packages mpi) #:use-module (gnu packages mpi)
#:use-module (gnu packages networking)
#:use-module (gnu packages perl) #:use-module (gnu packages perl)
#:use-module (gnu packages pkg-config) #:use-module (gnu packages pkg-config)
#:use-module (gnu packages parallel) #:use-module (gnu packages ruby)
#:use-module (gnu packages storage)
#:use-module (gnu packages networking)
#:use-module (gnu packages gtk)
#:use-module (gnu packages python)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages readline)
#:use-module (gnu packages tcl)
#:use-module (gnu packages tls)
#:use-module (gnu packages commencement)
#:use-module (gnu packages gcc)
#:use-module (gnu packages chemistry)
#:use-module (gnu packages sphinx) #:use-module (gnu packages sphinx)
#:use-module (srfi srfi-1)
#:use-module (gnu packages mpi)
#:use-module (gnu packages sssd)
#:use-module (gnu packages fabric-management)
#:use-module (gnu packages benchmark)
#:use-module (gnu packages messaging)
#:use-module (gnu packages web)
#:use-module (gnu packages gnome)
#:use-module (gnu packages cluster)
#:use-module (gnu packages libevent)
#:use-module (gnu packages xorg) #:use-module (gnu packages xorg)
#:use-module (gnu packages fontutils) #:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages flex)
#:use-module (gnu packages bison)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages autotools)
#:use-module (gnu packages fontutils)
#:use-module (guix build-system gnu)
#:use-module (gnu packages image)
#:use-module (gnu packages maths)
#:use-module (guix utils)
#:use-module (gnu packages cmake)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages boost)
#:use-module (gnu packages curl)
#:use-module (gnu packages cryptsetup)
#:use-module (gnu packages xml)
#:use-module (gnu packages admin)
#:use-module (gnu packages assembly)
#:use-module (gnu packages authentication)
#:use-module (gnu packages bdw-gc)
#:use-module (gnu packages boost)
#:use-module (gnu packages compression)
#:use-module (gnu packages crypto)
#:use-module (gnu packages cryptsetup)
#:use-module (gnu packages curl)
#:use-module (gnu packages databases)
#:use-module (gnu packages disk)
#:use-module (gnu packages gperf)
#:use-module (gnu packages jemalloc)
#:use-module (gnu packages linux)
#:use-module (gnu packages lua)
#:use-module (gnu packages ncurses)
#:use-module (gnu packages networking)
#:use-module (gnu packages nss)
#:use-module (gnu packages openldap)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages python)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages tls)
#:use-module (gnu packages web)
;; #:use-module (gnu packages glicid)
#:use-module (gnu packages pretty-print)
#:use-module (gnu packages virtualization)
;; #:use-module (glicid packages storage)
#:use-module (glicid packages mpi)
#:use-module (glicid packages gcc)
) )
;;;;;;;;
(define-public glicid-librdkafka-09 (define-public glicid-librdkafka-09
(package (package
(inherit librdkafka) (inherit librdkafka)
@ -107,12 +31,8 @@
(version "0.9.2") (version "0.9.2")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "https://github.com/edenhill/librdkafka/archive/v" version ".tar.gz"))
"https://github.com/edenhill/librdkafka/archive/v" version (sha256 (base32 "0938yn1msaq8xcj5z7b3jcdy6rslh9kxmvz01r8rdcgbarlvchy2"))))))
".tar.gz"))
(sha256
(base32
"0938yn1msaq8xcj5z7b3jcdy6rslh9kxmvz01r8rdcgbarlvchy2"))))))
(define-public glicid-x2go (define-public glicid-x2go
(package (package
@ -120,19 +40,12 @@
(version "4.1.0.3") (version "4.1.0.3")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "https://code.x2go.org/releases/source/x2goserver/x2goserver-" version ".tar.gz"))
"https://code.x2go.org/releases/source/x2goserver/x2goserver-" (sha256 (base32 "1l6wd708kbipib4ldprfiihqmj4895nifg0bkws4x97majislxk7"))))
version ".tar.gz"))
(sha256
(base32
"1l6wd708kbipib4ldprfiihqmj4895nifg0bkws4x97majislxk7"))))
(native-inputs `(("autoconf" ,autoconf) (native-inputs `(("autoconf" ,autoconf)
("automake" ,automake) ("automake" ,automake)
("libtool" ,libtool))) ("libtool" ,libtool)))
(inputs `(("perl" ,perl))) (inputs `(("perl" ,perl)))
(build-system gnu-build-system) (build-system gnu-build-system)
(synopsis "X2go") (synopsis "X2go")
(description "X2go") (description "X2go")
@ -144,13 +57,10 @@
(inherit gromacs) (inherit gromacs)
(name "glicid-gromacs-openmpi") (name "glicid-gromacs-openmpi")
(inputs `(("openmpi" ,openmpi) (inputs `(("openmpi" ,openmpi)
;; ("openssh", openssh) ;; only for tests... disabled now
,@(package-inputs gromacs))) ,@(package-inputs gromacs)))
(build-system cmake-build-system) (build-system cmake-build-system)
(arguments (arguments
`(#:configure-flags (list "-DGMX_DEVELOPER_BUILD=on" ;Needed to run tests `(#:configure-flags (list "-DGMX_DEVELOPER_BUILD=on"
;; Unbundling
"-DGMX_USE_LMFIT=EXTERNAL" "-DGMX_USE_LMFIT=EXTERNAL"
"-DGMX_BUILD_OWN_FFTW=off" "-DGMX_BUILD_OWN_FFTW=off"
"-DGMX_EXTERNAL_BLAS=on" "-DGMX_EXTERNAL_BLAS=on"
@ -158,31 +68,19 @@
"-DGMX_EXTERNAL_TNG=on" "-DGMX_EXTERNAL_TNG=on"
"-DGMX_EXTERNAL_ZLIB=on" "-DGMX_EXTERNAL_ZLIB=on"
"-DGMX_EXTERNAL_TINYXML2=on" "-DGMX_EXTERNAL_TINYXML2=on"
;; special glicid
"-DGMX_MPI=on" "-DGMX_MPI=on"
"-DCMAKE_C_COMPILER=mpicc" "-DCMAKE_C_COMPILER=mpicc"
"-DCMAKE_CXX_COMPILER=mpicxx" "-DCMAKE_CXX_COMPILER=mpicxx"
"-DGMX_DOUBLE=off" "-DGMX_DOUBLE=off"
"-DGMX_OPENMP=on" "-DGMX_OPENMP=on"
"-DGMX_SIMD=AVX2_256" "-DGMX_SIMD=AVX2_256"
(string-append "-DTinyXML2_DIR=" (string-append "-DTinyXML2_DIR=" (assoc-ref %build-inputs "tinyxml2"))
(assoc-ref %build-inputs
"tinyxml2"))
;; Workaround for cmake/FindSphinx.cmake version parsing that does
;; not understand the guix-wrapped `sphinx-build --version' answer
(string-append "-DSPHINX_EXECUTABLE_VERSION=" (string-append "-DSPHINX_EXECUTABLE_VERSION="
,(package-version python-sphinx))) ,(package-version python-sphinx)))
#:tests? #f #:tests? #f
#:phases (modify-phases %standard-phases #:phases (modify-phases %standard-phases
(add-after 'unpack 'fixes (add-after 'unpack 'fixes
(lambda* (#:key inputs #:allow-other-keys) (lambda* (#:key inputs #:allow-other-keys)
;; Still bundled: part of gromacs, source behind registration
;; but free software anyways
;; (delete-file-recursively "src/external/vmd_molfile")
;; Still bundled: threads-based OpenMPI-compatible fallback
;; designed to be bundled like that
;; (delete-file-recursively "src/external/thread_mpi")
;; Unbundling
(delete-file-recursively "src/external/lmfit") (delete-file-recursively "src/external/lmfit")
(delete-file-recursively "src/external/clFFT") (delete-file-recursively "src/external/clFFT")
(delete-file-recursively "src/external/fftpack") (delete-file-recursively "src/external/fftpack")
@ -190,17 +88,11 @@
(delete-file-recursively "src/external/tng_io") (delete-file-recursively "src/external/tng_io")
(delete-file-recursively "src/external/tinyxml2") (delete-file-recursively "src/external/tinyxml2")
(delete-file-recursively "src/external/googletest") (delete-file-recursively "src/external/googletest")
(copy-recursively (assoc-ref inputs "googletest-source") (copy-recursively (assoc-ref inputs "googletest-source") "src/external/googletest")
"src/external/googletest")
;; This test warns about the build host hardware, disable
(substitute* "src/gromacs/hardware/tests/hardwaretopology.cpp" (substitute* "src/gromacs/hardware/tests/hardwaretopology.cpp"
(("TEST\\(HardwareTopologyTest, HwlocExecute\\)") (("TEST\\(HardwareTopologyTest, HwlocExecute\\)")
"void __guix_disabled()")) "void __guix_disabled()"))
#t))))) #t)))))))
)
)
(define-public glicid-python-nbxmpp (define-public glicid-python-nbxmpp
(package (package
@ -210,23 +102,7 @@
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "nbxmpp" version)) (uri (pypi-uri "nbxmpp" version))
(sha256 (sha256 (base32 "0vw5drr077w9ks4crnw6pwa4735ycyjdcm54knc3w4in4x5027wr")))) ))
(base32
"0vw5drr077w9ks4crnw6pwa4735ycyjdcm54knc3w4in4x5027wr"))))
))
; no more useful
;(define-public glicid-specific-hdf5
; (package
; (inherit hdf5-1.12)
; (name "glicid-specific-hdf5")
; ;; (arguments
; ;; `(#:tests? #f)
; ;; )
; (native-inputs `(("gcc" ,gcc-11)
; ("gfortran" ,gfortran-11)
; ,@(package-native-inputs hdf5-1.12)))))
(define-public glicid-motif (define-public glicid-motif
(package (package
@ -234,29 +110,15 @@
(version "2.3.8") (version "2.3.8")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
;; (uri (string-append "https://sourceforge.net/projects/motif/files/Motif%202.3.8%20Source%20Code/motif-2.3.8.tar.gz/download")) (uri (string-append "mirror://sourceforge/motif/Motif%202.3.8%20Source%20Code/motif-2.3.8.tar.gz"))
;; (uri (string-append "mirror://sourceforge/motif/files/Motif%202.3.8%20Source%20Code/motif-2.3.8.tar.gz"))
(uri (string-append
"mirror://sourceforge/motif/Motif%202.3.8%20Source%20Code/motif-2.3.8.tar.gz"))
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (base32 "1rxwkrhmj8sfg7dwmkhq885valwqbh26d79033q7vb7fcqv756w5"))))
(sha256
(base32
"1rxwkrhmj8sfg7dwmkhq885valwqbh26d79033q7vb7fcqv756w5"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:make-flags `(#:make-flags
;; #:make-flags
(list (string-append "PREFIX=" %output) (list (string-append "PREFIX=" %output)
;; (string-append "CC=" ,(cc-for-target)) (string-append "CPPFLAGS=-I" (assoc-ref %build-inputs "freetype") "/include/freetype2")
;; Xft.h #includes <ft2build.h> without ‘freetype2/’. The Makefile
;; works around this by hard-coding /usr/include & $PREFIX.
(string-append "CPPFLAGS=-I"
(assoc-ref %build-inputs "freetype")
"/include/freetype2")
"V=1"))) "V=1")))
(inputs `(("libxext" ,libxext) (inputs `(("libxext" ,libxext)
("libx11" ,libx11) ("libx11" ,libx11)
("freetype" ,freetype) ("freetype" ,freetype)
@ -266,13 +128,10 @@
("flex" ,flex) ("flex" ,flex)
("bison" ,bison) ("bison" ,bison)
("libxt" ,libxt))) ("libxt" ,libxt)))
(synopsis "Motif") (synopsis "Motif")
(description "Motif ") (description "Motif ")
(home-page "https://sourceforge.net/untested") (home-page "https://sourceforge.net/untested")
(license license:gpl2+) ;probably not !!! (license license:gpl2+)))
))
(define-public glicid-xmgrace (define-public glicid-xmgrace
(package (package
@ -281,15 +140,11 @@
(source (origin (source (origin
(method git-fetch) (method git-fetch)
(uri (git-reference (uri (git-reference
(url (url "https://oauth2:glpat-RsX2GjsD2WrzXubiJeou@gitlab.univ-nantes.fr/CCIPL/legacy_code_mirror/grace.git")
"https://oauth2:glpat-RsX2GjsD2WrzXubiJeou@gitlab.univ-nantes.fr/CCIPL/legacy_code_mirror/grace.git")
(commit (string-append "v" version)))) (commit (string-append "v" version))))
(file-name (git-file-name name version)) (file-name (git-file-name name version))
(sha256 (sha256 (base32 "1wb8v0q8xa2akas0swpgdgw1s66i50k7kh1g2f894hnk91fzx56z"))))
(base32
"1wb8v0q8xa2akas0swpgdgw1s66i50k7kh1g2f894hnk91fzx56z"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:phases (modify-phases %standard-phases `(#:phases (modify-phases %standard-phases
(add-after 'configure 'patch-/bin/sh (add-after 'configure 'patch-/bin/sh
@ -297,7 +152,6 @@
(substitute* '("Make.conf") (substitute* '("Make.conf")
(("/bin/sh") (("/bin/sh")
(which "bash")))))))) (which "bash"))))))))
(inputs `(("libx11" ,libx11) (inputs `(("libx11" ,libx11)
("libxft" ,libxft) ("libxft" ,libxft)
("libxt" ,libxt) ("libxt" ,libxt)
@ -307,22 +161,11 @@
("glicid-motif" ,glicid-motif) ("glicid-motif" ,glicid-motif)
("fontconfig" ,fontconfig) ("fontconfig" ,fontconfig)
("gfortran" ,gfortran) ("gfortran" ,gfortran)
("libjpeg-turbo" ,libjpeg-turbo) ("libjpeg-turbo" ,libjpeg-turbo) ))
;; ("libxmhtml", libxmhtml)
))
(synopsis "Xmgrace") (synopsis "Xmgrace")
(description "xmgrace") (description "xmgrace")
(home-page "https://sourceforge.net/untested") (home-page "https://sourceforge.net/untested")
(license license:gpl2+) ; probably not (license license:gpl2+) ))
))
(use-modules (guix packages))
(use-modules (guix download))
(use-modules (gnu packages ruby))
(use-modules (guix build-system ruby))
;(use-modules (guix licenses))
(define-public ruby-asciidoctor-revealjs (define-public ruby-asciidoctor-revealjs
(package (package
@ -338,14 +181,11 @@
(arguments (arguments
'(#:tests? #f)) '(#:tests? #f))
(propagated-inputs `(("ruby-asciidoctor" ,ruby-asciidoctor) (propagated-inputs `(("ruby-asciidoctor" ,ruby-asciidoctor)
;; ("ruby-concurrent-ruby" ,ruby-concurrent-ruby)
("ruby-concurrent" ,ruby-concurrent) ("ruby-concurrent" ,ruby-concurrent)
("ruby-asciidoctor-kroki" ,ruby-asciidoctor-kroki) ("ruby-asciidoctor-kroki" ,ruby-asciidoctor-kroki)
("ruby-thread-safe" ,ruby-thread-safe))) ("ruby-thread-safe" ,ruby-thread-safe)))
(synopsis (synopsis "Converts AsciiDoc documents into HTML5 presentations designed to be executed by the reveal.js presentation framework.")
"Converts AsciiDoc documents into HTML5 presentations designed to be executed by the reveal.js presentation framework.") (description "Converts AsciiDoc documents into HTML5 presentations designed to be executed by the reveal.js presentation framework.")
(description
"Converts AsciiDoc documents into HTML5 presentations designed to be executed by the reveal.js presentation framework.")
(home-page "https://github.com/asciidoctor/asciidoctor-reveal.js") (home-page "https://github.com/asciidoctor/asciidoctor-reveal.js")
(license license:expat))) (license license:expat)))
@ -356,20 +196,12 @@
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (rubygems-uri "asciidoctor-kroki" version)) (uri (rubygems-uri "asciidoctor-kroki" version))
(sha256 (sha256 (base32 "13gx22xld4rbxxirnsxyrsajy9v666r8a4ngms71611af5afgk6w"))))
(base32
"13gx22xld4rbxxirnsxyrsajy9v666r8a4ngms71611af5afgk6w"))))
(build-system ruby-build-system) (build-system ruby-build-system)
(arguments (arguments
'(#:tests? #f)) '(#:tests? #f))
(propagated-inputs `(("ruby-asciidoctor" ,ruby-asciidoctor))) (propagated-inputs `(("ruby-asciidoctor" ,ruby-asciidoctor)))
(synopsis (synopsis "An extension for Asciidoctor to convert diagrams to images using https://kroki.io")
"An extension for Asciidoctor to convert diagrams to images using https://kroki.io") (description "An extension for Asciidoctor to convert diagrams to images using https://kroki.io")
(description
"An extension for Asciidoctor to convert diagrams to images using https://kroki.io")
(home-page "https://github.com/Mogztter/asciidoctor-kroki") (home-page "https://github.com/Mogztter/asciidoctor-kroki")
(license license:expat))) (license license:expat)))
;; python-glances is now upstreamed as glances in python-xyz
;;; glicid.scm ends here

30
glicid/packages/gnome.scm
View file

@ -13,33 +13,3 @@
(name "glicid-terminator") (name "glicid-terminator")
(propagated-inputs `(("sssd" ,sssd) (propagated-inputs `(("sssd" ,sssd)
,@(package-propagated-inputs terminator))))) ,@(package-propagated-inputs terminator)))))
;; guix defined version is now on par or newer…
;(define-public network-manager-openconnect-upstream
; (package
; (inherit network-manager-openconnect)
; (name "network-manager-openconnect-upstream")
; (version "1.2.8")
;; (version "1.2.7")
; (source (origin
; (method url-fetch)
; (uri (string-append
; "mirror://gnome/sources/NetworkManager-openconnect/"
; (version-major+minor version)
; "/NetworkManager-openconnect-" version ".tar.xz"))
; (sha256
; (base32
; "1k6d6cv2c9v8gf0f2js6cklr3ijhaanbz0nhvlwy5n42bmwamvax"))))
; )
;)
;(define-public network-manager-openconnect-glicid
; (transform-package
; (
; (instead-of "openconnect" openconnect-upstream)
; network-manager-openconnect
; ) "glicid"
; )
;)

20
glicid/packages/golang.scm
View file

@ -27,8 +27,8 @@
(synopsis "color") (synopsis "color")
(description (description
"Package color is an ANSI color package to output colorized or SGR defined output "Package color is an ANSI color package to output colorized or SGR defined output
to the standard output. The API can be used in several way, pick one that suits to the standard output. The API can be used in several way, pick one that suits
you.") you.")
(license license:expat))) (license license:expat)))
(define-public go-github-com-pbnjay-memory-0.0.0-20190104145345-974d429e7ae4 (define-public go-github-com-pbnjay-memory-0.0.0-20190104145345-974d429e7ae4
@ -51,7 +51,7 @@ you.")
(synopsis "memory") (synopsis "memory")
(description (description
"Package memory provides a single method reporting total system memory accessible "Package memory provides a single method reporting total system memory accessible
to the kernel.") to the kernel.")
(license license:bsd-3))) (license license:bsd-3)))
(define-public go-golang-org-x-sys-0.0.0-20190222072716-a9d3bda3a223 (define-public go-golang-org-x-sys-0.0.0-20190222072716-a9d3bda3a223
@ -74,7 +74,7 @@ to the kernel.")
(synopsis "sys") (synopsis "sys")
(description (description
"This repository holds supplemental Go packages for low-level interactions with "This repository holds supplemental Go packages for low-level interactions with
the operating system.") the operating system.")
(license license:bsd-3))) (license license:bsd-3)))
(define-public go-github-com-mattn-go-isatty-0.0.8 (define-public go-github-com-mattn-go-isatty-0.0.8
@ -163,7 +163,7 @@ the operating system.")
(synopsis "sys") (synopsis "sys")
(description (description
"This repository holds supplemental Go packages for low-level interactions with "This repository holds supplemental Go packages for low-level interactions with
the operating system.") the operating system.")
(license license:bsd-3))) (license license:bsd-3)))
(define-public go-github-com-timescale-timescaledb-tune-0.14.3 (define-public go-github-com-timescale-timescaledb-tune-0.14.3
@ -191,9 +191,9 @@ the operating system.")
(synopsis "timescaledb-tune") (synopsis "timescaledb-tune")
(description (description
"@@code{timescaledb-tune} is a program for tuning a "@@code{timescaledb-tune} is a program for tuning a
@@url{https://github.com/timescale/timescaledb-tune/blob/v0.14.3/timescale/timescaledb,TimescaleDB} @@url{https://github.com/timescale/timescaledb-tune/blob/v0.14.3/timescale/timescaledb,TimescaleDB}
database to perform its best based on the host's resources such as memory and database to perform its best based on the host's resources such as memory and
number of CPUs. It parses the existing @@code{postgresql.conf} file to ensure number of CPUs. It parses the existing @@code{postgresql.conf} file to ensure
that the TimescaleDB extension is appropriately installed and provides that the TimescaleDB extension is appropriately installed and provides
recommendations for memory, parallelism, WAL, and other settings.") recommendations for memory, parallelism, WAL, and other settings.")
(license license:asl2.0))) (license license:asl2.0)))

49
glicid/packages/jupyter.scm
View file

@ -1,49 +0,0 @@
(define-module (glicid packages jupyter)
#:use-module (guix download)
#:use-module (guix git-download)
#:use-module (guix packages)
#:use-module (guix build-system python)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages check)
#:use-module (gnu packages python-xyz)
; #:use-module ((guix-science packages jupyter) #:prefix gs:)
)
;(define-public python-jupyterhub
; (package
; (inherit gs:python-jupyterhub)
; (name "python-jupyterhub")
; (version "4.0.0")
; (source (origin
; (method url-fetch)
; (uri (pypi-uri "jupyterhub" version))
; (sha256 (base32 "0rx82hmwi6m2c7q8mw8a7r45j8245schln5vq1q2nzcswjb2karc"))))))
;(define-public python-batchspawner
; (package
; (name "python-batchspawner")
; (version "1.2.0")
; (source (origin
; (method url-fetch)
; (uri (pypi-uri "batchspawner" version))
; (sha256 (base32 "089f18s79kb2983wy4vb3vcwynmw7pzxmv0jwfhjgxd3yfs4p4mi"))))
; (build-system python-build-system)
; (propagated-inputs (list python-async-generator python-jinja2 python-jupyterhub python-pytest))
; (home-page "http://jupyter.org")
; (synopsis "Batchspawner: A spawner for Jupyterhub to spawn notebooks using batch resource managers.")
; (description "Batchspawner: A spawner for Jupyterhub to spawn notebooks using batch resource managers.")
; (license license:bsd-3)))
;(define-public python-batchspawner-git
; (package
; (inherit python-batchspawner)
; (name "python-batchspawner")
; (version "d5f9a0b")
; (source
; (origin
; (method git-fetch)
; (uri (git-reference
; (url "https://github.com/jupyterhub/batchspawner")
; (commit version)))
; (sha256 (base32 "03z1ww5qlwjn3xs3lf9b78yrqq7kd6rd5bh2kn377md391hz09f7"))))))

26
glicid/packages/linux.scm
View file

@ -1,26 +0,0 @@
(define-module (glicid packages linux)
#:use-module (guix packages)
#:use-module (guix download)
#:use-module (guix utils)
#:use-module (guix git-download)
#:use-module ((guix licenses) #:prefix license:)
#:use-module (guix build-system gnu)
#:use-module (guix build-system go)
#:use-module (gnu packages)
#:use-module (gnu packages backup)
#:use-module (gnu packages compression)
#:use-module (gnu packages cryptsetup)
#:use-module (gnu packages golang)
#:use-module ((gnu packages linux) #:prefix gnu:)
#:use-module (gnu packages linux)
#:use-module (gnu system uuid)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages autotools)
#:use-module (gnu packages python)
#:use-module (gnu packages tls)
#:use-module (glicid packages golang)
#:use-module (glicid utils))
;; lots of obsolete packages deleted

194
glicid/packages/maths.scm
View file

@ -1,121 +1,18 @@
(define-module (glicid packages maths) (define-module (glicid packages maths)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (glicid utils)
#:use-module (guix utils) #:use-module (guix utils)
#:use-module (guix gexp)
#:use-module ((gnu packages maths) #:prefix gnu:) #:use-module ((gnu packages maths) #:prefix gnu:)
#:use-module (gnu packages commencement)
#:use-module (gnu packages mpi)
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix git-download) #:use-module (guix git-download)
#:use-module (gnu packages)
#:use-module (gnu packages compression)
#:use-module (guix build-system cmake) #:use-module (guix build-system cmake)
#:use-module ((guix licenses) #:prefix license:) #:use-module (gnu packages commencement)
#:use-module (glicid utils) #:use-module (gnu packages compression)
#:use-module (ice-9 regex)
#:use-module (ice-9 match)
#:use-module (guix gexp)
#:use-module ((guix build utils) #:select (alist-replace))
#:use-module (guix build-system ant)
#:use-module (guix build-system copy)
#:use-module (guix build-system dune)
#:use-module (guix build-system glib-or-gtk)
#:use-module (guix build-system gnu)
#:use-module (guix build-system meson)
#:use-module (guix build-system ocaml)
#:use-module (guix build-system perl)
#:use-module (guix build-system pyproject)
#:use-module (guix build-system python)
#:use-module (guix build-system ruby)
#:use-module (gnu packages algebra)
#:use-module (gnu packages audio)
#:use-module (gnu packages autotools)
#:use-module (gnu packages backup)
#:use-module (gnu packages base)
#:use-module (gnu packages bash)
#:use-module (gnu packages bison)
#:use-module (gnu packages boost)
#:use-module (gnu packages calendar)
#:use-module (gnu packages check)
#:use-module (gnu packages cmake)
#:use-module (gnu packages coq)
#:use-module (gnu packages curl)
#:use-module (gnu packages cyrus-sasl)
#:use-module (gnu packages cpp)
#:use-module (gnu packages datamash)
#:use-module (gnu packages dbm)
#:use-module (gnu packages documentation)
#:use-module (gnu packages elf)
#:use-module (gnu packages emacs)
#:use-module (gnu packages file)
#:use-module (gnu packages flex)
#:use-module (gnu packages fltk)
#:use-module (gnu packages fontutils)
#:use-module (gnu packages freedesktop)
#:use-module (gnu packages gettext)
#:use-module (gnu packages gcc)
#:use-module (gnu packages gd)
#:use-module (gnu packages ghostscript)
#:use-module (gnu packages glib)
#:use-module (gnu packages gperf)
#:use-module (gnu packages graphviz)
#:use-module (gnu packages groff)
#:use-module (gnu packages gtk)
#:use-module (gnu packages icu4c)
#:use-module (gnu packages image)
#:use-module (gnu packages image-processing)
#:use-module (gnu packages java)
#:use-module (gnu packages less)
#:use-module (gnu packages lisp)
#:use-module (gnu packages linux)
#:use-module (gnu packages llvm)
#:use-module (gnu packages logging)
#:use-module (gnu packages lua)
#:use-module (gnu packages gnome)
#:use-module (gnu packages guile)
#:use-module (gnu packages xorg)
#:use-module (gnu packages gl)
#:use-module (gnu packages imagemagick)
#:use-module (gnu packages m4)
#:use-module (gnu packages mpi) #:use-module (gnu packages mpi)
#:use-module (gnu packages multiprecision) #:use-module ((guix licenses) #:prefix license:)
#:use-module (gnu packages ncurses) )
#:use-module (gnu packages netpbm)
#:use-module (gnu packages ocaml)
#:use-module (gnu packages onc-rpc)
#:use-module (gnu packages parallel)
#:use-module (gnu packages pcre)
#:use-module (gnu packages popt)
#:use-module (gnu packages perl)
#:use-module (gnu packages prolog)
#:use-module (gnu packages pkg-config)
#:use-module (gnu packages pulseaudio)
#:use-module (gnu packages python)
#:use-module (gnu packages python-build)
#:use-module (gnu packages python-science)
#:use-module (gnu packages python-web)
#:use-module (gnu packages python-xyz)
#:use-module (gnu packages qt)
#:use-module (gnu packages readline)
#:use-module (gnu packages ruby)
#:use-module (gnu packages tbb)
#:use-module (gnu packages scheme)
#:use-module (gnu packages serialization)
#:use-module (gnu packages shells)
#:use-module (gnu packages simulation)
#:use-module (gnu packages sphinx)
#:use-module (gnu packages sqlite)
#:use-module (gnu packages swig)
#:use-module (gnu packages tcl)
#:use-module (gnu packages texinfo)
#:use-module (gnu packages tex)
#:use-module (gnu packages time)
#:use-module (gnu packages tls)
#:use-module (gnu packages version-control)
#:use-module (gnu packages wxwidgets)
#:use-module (gnu packages xdisorg)
#:use-module (gnu packages xml)
#:use-module (srfi srfi-1)
#:use-module (srfi srfi-26))
(define-public scalapack-upstream (define-public scalapack-upstream
(package (package
(inherit gnu:scalapack) (inherit gnu:scalapack)
@ -128,20 +25,16 @@
"https://oauth2:glpat-RsX2GjsD2WrzXubiJeou@gitlab.univ-nantes.fr/CCIPL/legacy_code_mirror/scalapack.git") "https://oauth2:glpat-RsX2GjsD2WrzXubiJeou@gitlab.univ-nantes.fr/CCIPL/legacy_code_mirror/scalapack.git")
(commit "myv2.0.2"))) (commit "myv2.0.2")))
(file-name "scalapack-univ-myv2") (file-name "scalapack-univ-myv2")
;; (patches (search-patches "scalapack-blacs-mpi-deprecations.patch")) (sha256 (base32 "1ccic46psf2hl9wsyflvkn5rxg8k17q578m9mzimvm9brbggf0na"))))
(sha256
(base32
"1ccic46psf2hl9wsyflvkn5rxg8k17q578m9mzimvm9brbggf0na"))))
(arguments (arguments
`(#:configure-flags `("-DBUILD_SHARED_LIBS:BOOL=YES") `(#:configure-flags `("-DBUILD_SHARED_LIBS:BOOL=YES")
#:phases (modify-phases %standard-phases #:phases (modify-phases %standard-phases
(add-before 'check 'mpi-setup (add-before 'check 'mpi-setup
,%openmpi-setup)))))) ,%openmpi-setup))))))
(define local:scalapack (define local:scalapack scalapack-upstream)
scalapack-upstream)
(define-public scalapack-latest (define-public scalapack-latest (latest-version local:scalapack gnu:scalapack))
(latest-version local:scalapack gnu:scalapack))
(define-public openblas-upstream-0.3.15 (define-public openblas-upstream-0.3.15
(package (package
@ -150,12 +43,8 @@
(version "0.3.15") (version "0.3.15")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "https://github.com/xianyi/OpenBLAS/releases/download/v" version "/OpenBLAS-" version ".tar.gz"))
"https://github.com/xianyi/OpenBLAS/releases/download/v" (sha256 (base32 "1gjbkrsh6n28hdp2ciyjigc8vg764d2r0jbzl63v753mjzn9va9h"))))))
version "/OpenBLAS-" version ".tar.gz"))
(sha256
(base32
"1gjbkrsh6n28hdp2ciyjigc8vg764d2r0jbzl63v753mjzn9va9h"))))))
(define-public hdf5-glicid (define-public hdf5-glicid
@ -166,24 +55,8 @@
(prepend gfortran-toolchain))))) (prepend gfortran-toolchain)))))
(define local:openblas (define local:openblas openblas-upstream-0.3.15)
openblas-upstream-0.3.15) (define-public scalapack-latest (latest-version local:openblas gnu:openblas))
(define-public scalapack-latest
(latest-version local:openblas gnu:openblas))
(use-modules (guix packages))
(use-modules (guix download))
(use-modules (gnu packages linux))
(use-modules (gnu packages gcc))
(use-modules (gnu packages compression))
;(use-modules (gnu packages glicid))
(use-modules (guix git-download))
(use-modules (guix build-system cmake))
(use-modules ((guix licenses)
#:prefix license:))
(define-public libsolv-upstream (define-public libsolv-upstream
(package (package
@ -195,17 +68,13 @@
(url "https://github.com/openSUSE/libsolv.git") (url "https://github.com/openSUSE/libsolv.git")
(commit version))) (commit version)))
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256 (base32 "12z63kcna9swh3vzxk3sac0l4by5z8q22wip9cyq5b7wp9m3hn4b"))))
(base32 "12z63kcna9swh3vzxk3sac0l4by5z8q22wip9cyq5b7wp9m3hn4b"))))
(build-system cmake-build-system) (build-system cmake-build-system)
(inputs (list zlib)) (inputs (list zlib))
(home-page "https://github.com/openSUSE/libsolv") (home-page "https://github.com/openSUSE/libsolv")
(synopsis "libsolv, a free package dependency solver using a satisfiability algorithm.") (synopsis "libsolv, a free package dependency solver using a satisfiability algorithm.")
(description "libsolv, a free package dependency solver using a satisfiability algorithm.") (description "libsolv, a free package dependency solver using a satisfiability algorithm.")
(license license:bsd-3)) (license license:bsd-3)) )
)
(define-public glicid-dealii (define-public glicid-dealii
(package (package
@ -213,11 +82,7 @@
(version "9.6.0") (version "9.6.0")
(name "glicid-dealii") (name "glicid-dealii")
(arguments (arguments
(list #:build-type "Release" ; Only Debug, Release or DebugRelease. (list #:build-type "Release"
;; The tests take too long and must be explicitly enabled with
;; "make setup_tests".
;; See https://www.dealii.org/developer/developers/testsuite.html.
;; (They can also be run for an already installed deal.II.)
#:tests? #f #:tests? #f
#:configure-flags #:configure-flags
#~(let ((doc (string-append #$output:doc "/share/doc/" #~(let ((doc (string-append #$output:doc "/share/doc/"
@ -226,43 +91,25 @@
(string-append "-DCMAKE_CXX_FLAGS='-march=znver3'") (string-append "-DCMAKE_CXX_FLAGS='-march=znver3'")
(string-append "-DDEAL_II_DOCREADME_RELDIR=" doc) (string-append "-DDEAL_II_DOCREADME_RELDIR=" doc)
(string-append "-DDEAL_II_DOCHTML_RELDIR=" doc "/html") (string-append "-DDEAL_II_DOCHTML_RELDIR=" doc "/html")
;; Don't compile the examples because the source and
;; CMakeLists.txt are installed anyway, allowing users to
;; do so for themselves.
"-DDEAL_II_COMPILE_EXAMPLES=OFF" "-DDEAL_II_COMPILE_EXAMPLES=OFF"
(string-append "-DDEAL_II_EXAMPLES_RELDIR=" doc (string-append "-DDEAL_II_EXAMPLES_RELDIR=" doc
"/examples"))) "/examples")))
#:phases #:phases
#~(modify-phases %standard-phases #~(modify-phases %standard-phases
;; Without unsetting CPATH, the build fails with the following
;; error (similar to <https://bugs.gnu.org/30756>):
;;
;; /gnu/store/…-gcc-11.3.0/include/c++/math.h:30:16: fatal error: math.h: No such file or directory
;; 30 | # include_next <math.h>
;; | ^~~~~~~~
;;
;; Why does unsetting CPATH magically fix the error?
;; TODO: Properly fix this issue.
(add-after 'set-paths 'unset-cpath (add-after 'set-paths 'unset-cpath
(lambda _ (lambda _
(unsetenv "CPATH"))) (unsetenv "CPATH")))
(add-after 'install 'remove-build-logs (add-after 'install 'remove-build-logs
;; These build logs leak the name of the build directory by
;; storing the values of CMAKE_SOURCE_DIR and
;; CMAKE_BINARY_DIR.
(lambda _ (lambda _
(let ((doc (string-append #$output:doc "/share/doc/" (let ((doc (string-append #$output:doc "/share/doc/"
#$name "-" #$version))) #$name "-" #$version)))
(for-each delete-file (for-each delete-file
(map (lambda (f) (string-append doc "/" f)) (map (lambda (f) (string-append doc "/" f))
'("detailed.log" "summary.log"))))))))) '("detailed.log" "summary.log"))))))))) ))
))
(define trilinos-for-dealii-openmpi (define trilinos-for-dealii-openmpi
(@@ (gnu packages maths) trilinos-for-dealii-openmpi)) (@@ (gnu packages maths) trilinos-for-dealii-openmpi))
(define-public glicid-dealii-openmpi (define-public glicid-dealii-openmpi
(package (package
(inherit glicid-dealii) (inherit glicid-dealii)
@ -289,8 +136,5 @@
#~(cons "-DDEAL_II_WITH_MPI=ON" #$flags)) #~(cons "-DDEAL_II_WITH_MPI=ON" #$flags))
((#:phases phases #~%standard-phases) ((#:phases phases #~%standard-phases)
#~(modify-phases #$phases #~(modify-phases #$phases
;; The build failure fixed by this phase does not manifest when
;; Kokkos is included via Trilinos.
(delete 'unset-cpath))))) (delete 'unset-cpath)))))
(synopsis "Finite element library (with MPI support)"))) (synopsis "Finite element library (with MPI support)")))

6
glicid/packages/monitoring.scm
View file

@ -17,8 +17,6 @@
(method url-fetch) (method url-fetch)
(uri (string-append "https://cdn.zabbix.com/zabbix/sources/stable/" (version-major+minor version) "/zabbix-" version ".tar.gz")) (uri (string-append "https://cdn.zabbix.com/zabbix/sources/stable/" (version-major+minor version) "/zabbix-" version ".tar.gz"))
(sha256 (base32 %zabbix-hash)) (sha256 (base32 %zabbix-hash))
;; YD upstream now able to cope with 2.17 timescaledb
;; (patches (search-patches "glicid/packages/patches/glicid-zabbix-timescaledb-2.17.patch"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(substitute* '("src/zabbix_proxy/proxy.c" "src/zabbix_server/server.c") '(substitute* '("src/zabbix_proxy/proxy.c" "src/zabbix_server/server.c")
@ -34,8 +32,6 @@
(method url-fetch) (method url-fetch)
(uri (string-append "https://cdn.zabbix.com/zabbix/sources/stable/" (version-major+minor version) "/zabbix-" version ".tar.gz")) (uri (string-append "https://cdn.zabbix.com/zabbix/sources/stable/" (version-major+minor version) "/zabbix-" version ".tar.gz"))
(sha256 (base32 %zabbix-hash)) (sha256 (base32 %zabbix-hash))
;; YD upstream now able to cope with 2.17 timescaledb
;; (patches (search-patches "glicid/packages/patches/glicid-zabbix-timescaledb-2.17.patch"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(substitute* '("src/zabbix_proxy/proxy.c" "src/zabbix_server/server.c") '(substitute* '("src/zabbix_proxy/proxy.c" "src/zabbix_server/server.c")
@ -51,8 +47,6 @@
(method url-fetch) (method url-fetch)
(uri (string-append "https://cdn.zabbix.com/zabbix/sources/stable/" (version-major+minor version) "/zabbix-" version ".tar.gz")) (uri (string-append "https://cdn.zabbix.com/zabbix/sources/stable/" (version-major+minor version) "/zabbix-" version ".tar.gz"))
(sha256 (base32 %zabbix-hash)) (sha256 (base32 %zabbix-hash))
;; YD upstream now able to cope with 2.17 timescaledb
;; (patches (search-patches "glicid/packages/patches/glicid-zabbix-timescaledb-2.17.patch"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(substitute* '("src/zabbix_proxy/proxy.c" "src/zabbix_server/server.c") '(substitute* '("src/zabbix_proxy/proxy.c" "src/zabbix_server/server.c")

7
glicid/packages/mpi.scm
View file

@ -1,8 +1,7 @@
(define-module (glicid packages mpi) (define-module (glicid packages mpi)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (guix download) #:use-module (guix download)
#:use-module ((gnu packages mpi) #:use-module ((gnu packages mpi) #:prefix gnu:)
#:prefix gnu:)
#:use-module (glicid packages linux) #:use-module (glicid packages linux)
#:use-module (glicid packages fabric-management) #:use-module (glicid packages fabric-management)
#:use-module (glicid utils) #:use-module (glicid utils)
@ -11,8 +10,6 @@
#:use-module (gnu packages)) #:use-module (gnu packages))
(define-public openmpi-glicid (define-public openmpi-glicid
(package (package
(inherit gnu:openmpi-4) (inherit gnu:openmpi-4)
(name "openmpi-glicid") (name "openmpi-glicid")))
))

8
glicid/packages/nfs.scm
View file

@ -33,15 +33,11 @@
(url "https://github.com/nfs-ganesha/nfs-ganesha.git") (url "https://github.com/nfs-ganesha/nfs-ganesha.git")
(commit (string-append "V" version)) (commit (string-append "V" version))
(recursive? #t))) (recursive? #t)))
(sha256 (sha256 (base32 "0rdg3mjqrr4a8mywxkfis25gkbn4fylw42hg1d9cvp4dwrjk3hl4"))
(base32
"0rdg3mjqrr4a8mywxkfis25gkbn4fylw42hg1d9cvp4dwrjk3hl4"))
(file-name (string-append name "-" version "-checkout")))) (file-name (string-append name "-" version "-checkout"))))
(build-system cmake-build-system) (build-system cmake-build-system)
(arguments (arguments
`(#:configure-flags (list (string-append "-DLIB_INSTALL_DIR=" `(#:configure-flags (list (string-append "-DLIB_INSTALL_DIR=" (assoc-ref %outputs "out") "/lib"))
(assoc-ref %outputs "out")
"/lib"))
#:phases (modify-phases %standard-phases #:phases (modify-phases %standard-phases
(add-after 'unpack 'chdir (add-after 'unpack 'chdir
(lambda _ (lambda _

6
glicid/packages/openldap.scm
View file

@ -31,7 +31,7 @@
(uri (list (string-append "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-" version ".tgz"))) (uri (list (string-append "https://www.openldap.org/software/download/OpenLDAP/openldap-release/openldap-" version ".tgz")))
(sha256 (base32 "184ywcpw9gbrllp1a1q9a6g7aq583phxnhj4cd1lv622yn69jbh8")))) (sha256 (base32 "184ywcpw9gbrllp1a1q9a6g7aq583phxnhj4cd1lv622yn69jbh8"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(inputs (list argon2 cyrus-sasl openssl libevent libxcrypt libltdl lz4 perl snappy unixodbc wiredtiger zlib)) ;; YD : was libgcrypt ?? but broken (Sept 2024) (inputs (list argon2 cyrus-sasl openssl libevent libxcrypt libltdl lz4 perl snappy unixodbc wiredtiger zlib))
(native-inputs (list bdb groff libtool pkg-config)) (native-inputs (list bdb groff libtool pkg-config))
(arguments `( (arguments `(
#:tests? #f #:tests? #f
@ -69,9 +69,7 @@
(sha256 (base32 "050fzcmxmf6y15dlcffc4gxr3wkk7fliqqwhlwqzbjwk8vkn3mn6")))) (sha256 (base32 "050fzcmxmf6y15dlcffc4gxr3wkk7fliqqwhlwqzbjwk8vkn3mn6"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(arguments (arguments
`(#:configure-flags (list (string-append "--with-pam-seclib-dir=" `(#:configure-flags (list (string-append "--with-pam-seclib-dir=" (assoc-ref %outputs "out") "/lib/security/")
(assoc-ref %outputs "out")
"/lib/security/")
"--with-ldap-conf-file=/etc/nslcd.conf") "--with-ldap-conf-file=/etc/nslcd.conf")
#:phases (modify-phases %standard-phases #:phases (modify-phases %standard-phases
(add-after 'unpack 'override-nslcd.conf-install-path (add-after 'unpack 'override-nslcd.conf-install-path

33
glicid/packages/perf-monitoring.scm
View file

@ -12,31 +12,24 @@
#:export (nvtop)) #:export (nvtop))
(package (package
(name "nvtop") (name "nvtop")
(version "3.0.2") (version "3.0.2")
(source (source
(origin (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://github.com/Syllo/nvtop/archive/refs/tags/" version ".tar.gz")) (uri (string-append "https://github.com/Syllo/nvtop/archive/refs/tags/" version ".tar.gz"))
(file-name (string-append name "-" version ".tar.gz")) (file-name (string-append name "-" version ".tar.gz"))
(sha256 (sha256 (base32 "005f9dsaf3w0nck1r0h9mznv4svav8bc4l28f0h57zkmssi4byk3"))))
(base32 (build-system cmake-build-system)
"005f9dsaf3w0nck1r0h9mznv4svav8bc4l28f0h57zkmssi4byk3")))) (arguments
(build-system cmake-build-system)
(arguments
`(#:tests? #f ; No tests available `(#:tests? #f ; No tests available
#:configure-flags '("-DNVIDIA_SUPPORT=ON" "-DINTEL_SUPPORT=ON" "-DAMDGPU_SUPPORT=ON" "-DMSM_SUPPORT=ON") #:configure-flags '("-DNVIDIA_SUPPORT=ON" "-DINTEL_SUPPORT=ON" "-DAMDGPU_SUPPORT=ON" "-DMSM_SUPPORT=ON")))
) (inputs
)
(inputs
`(("ncurses" ,ncurses) `(("ncurses" ,ncurses)
("pkg-config" ,pkg-config) ("pkg-config" ,pkg-config)
("eudev" ,eudev) ("eudev" ,eudev)
("libdrm" , libdrm) ("libdrm" , libdrm)))
)) (home-page "https://github.com/Syllo/nvtop")
(home-page "https://github.com/Syllo/nvtop") (synopsis "NVIDIA GPUs htop like monitoring tool")
(synopsis "NVIDIA GPUs htop like monitoring tool") (description "Nvtop is a htop-like monitoring tool for NVIDIA GPUs. It can show a quick overview of the GPU usage and the list of processes using the GPU.")
(description "Nvtop is a htop-like monitoring tool for NVIDIA GPUs. It can show a quick overview of the GPU usage and the list of processes using the GPU.") (license license:expat))
(license license:expat)
)

8
glicid/packages/perl.scm
View file

@ -10,12 +10,8 @@
(version "1.14") (version "1.14")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "mirror://cpan/authors/id/D/DO/DOUGM/ExtUtils-Embed-" version ".tar.gz"))
"mirror://cpan/authors/id/D/DO/DOUGM/ExtUtils-Embed-" (sha256 (base32 "1w55q0wz6i4k9p500mc4wmr8jndnczb6qqrd2m1mrnx13v2mbr7h"))))
version ".tar.gz"))
(sha256
(base32
"1w55q0wz6i4k9p500mc4wmr8jndnczb6qqrd2m1mrnx13v2mbr7h"))))
(build-system perl-build-system) (build-system perl-build-system)
(arguments (arguments
'(#:tests? #f)) '(#:tests? #f))

148
glicid/packages/php.scm
View file

@ -52,12 +52,6 @@
(snippet (snippet
'(with-directory-excursion "ext" '(with-directory-excursion "ext"
(for-each delete-file-recursively (for-each delete-file-recursively
;; Some of the bundled libraries have no proper upstream.
;; Ideally we'd extract these out as separate packages:
;;"mbstring/libmbfl"
;;"date/lib"
;;"bcmath/libbcmath"
;;"fileinfo/libmagic" ; a patched version of libmagic
'("gd/libgd" '("gd/libgd"
"pcre/pcre2lib" "pcre/pcre2lib"
"xmlrpc/libxmlrpc")))))) "xmlrpc/libxmlrpc"))))))
@ -71,15 +65,13 @@
(list (with "--with-bz2" "bzip2") (list (with "--with-bz2" "bzip2")
(with "--with-curl" "curl") (with "--with-curl" "curl")
(with "--with-gdbm" "gdbm") (with "--with-gdbm" "gdbm")
(with "--with-gettext" "libc") ; libintl.h (with "--with-gettext" "libc")
(with "--with-gmp" "gmp") (with "--with-gmp" "gmp")
(with "--with-ldap" "openldap") (with "--with-ldap" "openldap")
(with "--with-ldap-sasl" "cyrus-sasl") (with "--with-ldap-sasl" "cyrus-sasl")
(with "--with-pdo-pgsql" "postgresql") (with "--with-pdo-pgsql" "postgresql")
(with "--with-pdo-sqlite" "sqlite") (with "--with-pdo-sqlite" "sqlite")
(with "--with-pgsql" "postgresql") (with "--with-pgsql" "postgresql")
;; PHP’s Pspell extension, while retaining its current name,
;; now uses the Aspell library.
(with "--with-pspell" "aspell") (with "--with-pspell" "aspell")
(with "--with-readline" "readline") (with "--with-readline" "readline")
(with "--with-sodium" "libsodium") (with "--with-sodium" "libsodium")
@ -87,18 +79,15 @@
(with "--with-tidy" "tidy") (with "--with-tidy" "tidy")
(with "--with-xsl" "libxslt") (with "--with-xsl" "libxslt")
(with "--with-zlib-dir" "zlib") (with "--with-zlib-dir" "zlib")
;; We could add "--with-snmp", but it requires netsnmp that
;; we don't have a package for. It is used to build the snmp
;; extension of php.
"--with-external-pcre" "--with-external-pcre"
"--with-external-gd" "--with-external-gd"
"--with-iconv" "--with-iconv"
"--with-openssl" "--with-openssl"
"--with-mysqli" ; Required for, e.g. wordpress "--with-mysqli"
"--with-pdo-mysql" "--with-pdo-mysql"
"--with-zip" "--with-zip"
"--with-zlib" "--with-zlib"
"--enable-bcmath" ; Required for, e.g. Zabbix frontend "--enable-bcmath"
"--enable-calendar" "--enable-calendar"
"--enable-dba=shared" "--enable-dba=shared"
"--enable-exif" "--enable-exif"
@ -115,12 +104,9 @@
(modify-phases %standard-phases (modify-phases %standard-phases
(add-after 'unpack 'do-not-record-build-flags (add-after 'unpack 'do-not-record-build-flags
(lambda _ (lambda _
;; Prevent configure flags from being stored and causing
;; unnecessary runtime dependencies.
(substitute* "scripts/php-config.in" (substitute* "scripts/php-config.in"
(("@CONFIGURE_OPTIONS@") "") (("@CONFIGURE_OPTIONS@") "")
(("@PHP_LDFLAGS@") "")) (("@PHP_LDFLAGS@") ""))
;; This file has ISO-8859-1 encoding.
(with-fluids ((%default-port-encoding "ISO-8859-1")) (with-fluids ((%default-port-encoding "ISO-8859-1"))
(substitute* "main/build-defs.h.in" (substitute* "main/build-defs.h.in"
(("@CONFIGURE_COMMAND@") "(omitted)"))))) (("@CONFIGURE_COMMAND@") "(omitted)")))))
@ -130,8 +116,6 @@
(("/bin/sh") (which "sh"))))) (("/bin/sh") (which "sh")))))
(add-before 'check 'prepare-tests (add-before 'check 'prepare-tests
(lambda _ (lambda _
;; Some of these files have ISO-8859-1 encoding, whereas others
;; use ASCII, so we can't use a "catch-all" find-files here.
(with-fluids ((%default-port-encoding "ISO-8859-1")) (with-fluids ((%default-port-encoding "ISO-8859-1"))
(substitute* '("ext/mbstring/tests/mb_send_mail02.phpt" (substitute* '("ext/mbstring/tests/mb_send_mail02.phpt"
"ext/mbstring/tests/mb_send_mail04.phpt" "ext/mbstring/tests/mb_send_mail04.phpt"
@ -145,20 +129,14 @@
"ext/standard/tests/general_functions/bug44667.phpt" "ext/standard/tests/general_functions/bug44667.phpt"
"ext/standard/tests/general_functions/proc_open.phpt") "ext/standard/tests/general_functions/proc_open.phpt")
(("/bin/cat") (which "cat"))) (("/bin/cat") (which "cat")))
;; The encoding of this file is not recognized, so we simply drop it.
(delete-file "ext/mbstring/tests/mb_send_mail07.phpt") (delete-file "ext/mbstring/tests/mb_send_mail07.phpt")
(substitute* "ext/standard/tests/streams/bug60602.phpt" (substitute* "ext/standard/tests/streams/bug60602.phpt"
(("'ls'") (string-append "'" (which "ls") "'"))) (("'ls'") (string-append "'" (which "ls") "'")))
,@(if (string-prefix? "arm" (or (%current-system) ,@(if (string-prefix? "arm" (or (%current-system)
(%current-target-system))) (%current-target-system)))
;; Drop tests known to fail on armhf.
'((for-each delete-file '((for-each delete-file
(list (list
"ext/calendar/tests/unixtojd_error1.phpt" "ext/calendar/tests/unixtojd_error1.phpt"
;; arm can be a lot slower, so a time-related test fails
"ext/fileinfo/tests/cve-2014-3538-nojit.phpt" "ext/fileinfo/tests/cve-2014-3538-nojit.phpt"
"ext/pcntl/tests/pcntl_unshare_01.phpt" "ext/pcntl/tests/pcntl_unshare_01.phpt"
"ext/pcre/tests/bug76514.phpt" "ext/pcre/tests/bug76514.phpt"
@ -174,168 +152,83 @@
"sapi/cli/tests/upload_2G.phpt" "sapi/cli/tests/upload_2G.phpt"
"Zend/tests/concat_003.phpt"))) "Zend/tests/concat_003.phpt")))
'()) '())
,@(if (target-ppc64le?) ,@(if (target-ppc64le?)
;; Drop tests known to fail on powerpc64le.
'((for-each delete-file '((for-each delete-file
(list (list
;; phpdbg watchpoints don't work.
;; Bug tracked upstream at:
;; https://bugs.php.net/bug.php?id=81408
"sapi/phpdbg/tests/watch_001.phpt" "sapi/phpdbg/tests/watch_001.phpt"
"sapi/phpdbg/tests/watch_003.phpt" "sapi/phpdbg/tests/watch_003.phpt"
"sapi/phpdbg/tests/watch_004.phpt" "sapi/phpdbg/tests/watch_004.phpt"
"sapi/phpdbg/tests/watch_005.phpt" "sapi/phpdbg/tests/watch_005.phpt"
"sapi/phpdbg/tests/watch_006.phpt"))) "sapi/phpdbg/tests/watch_006.phpt")))
'()) '())
;; Drop tests that are known to fail.
(for-each delete-file (for-each delete-file
'("ext/posix/tests/posix_getgrgid.phpt" ; Requires /etc/group. '("ext/posix/tests/posix_getgrgid.phpt"
"ext/posix/tests/posix_getgrnam_basic.phpt" ; Requires /etc/group. "ext/posix/tests/posix_getgrnam_basic.phpt"
"ext/sockets/tests/bug63000.phpt" ; Fails to detect OS. "ext/sockets/tests/bug63000.phpt"
"ext/sockets/tests/socket_shutdown.phpt" ; Requires DNS. "ext/sockets/tests/socket_shutdown.phpt"
"ext/sockets/tests/socket_send.phpt" ; Likewise. "ext/sockets/tests/socket_send.phpt"
"ext/sockets/tests/mcast_ipv4_recv.phpt" ; Requires multicast. "ext/sockets/tests/mcast_ipv4_recv.phpt"
;; These needs /etc/services.
"ext/standard/tests/general_functions/getservbyname_basic.phpt" "ext/standard/tests/general_functions/getservbyname_basic.phpt"
"ext/standard/tests/general_functions/getservbyport_basic.phpt" "ext/standard/tests/general_functions/getservbyport_basic.phpt"
"ext/standard/tests/general_functions/getservbyport_variation1.phpt" "ext/standard/tests/general_functions/getservbyport_variation1.phpt"
;; And /etc/protocols.
"ext/standard/tests/network/getprotobyname_basic.phpt" "ext/standard/tests/network/getprotobyname_basic.phpt"
"ext/standard/tests/network/getprotobynumber_basic.phpt" "ext/standard/tests/network/getprotobynumber_basic.phpt"
;; And exotic locales.
"ext/standard/tests/strings/setlocale_basic1.phpt" "ext/standard/tests/strings/setlocale_basic1.phpt"
"ext/standard/tests/strings/setlocale_basic2.phpt" "ext/standard/tests/strings/setlocale_basic2.phpt"
"ext/standard/tests/strings/setlocale_basic3.phpt" "ext/standard/tests/strings/setlocale_basic3.phpt"
"ext/standard/tests/strings/setlocale_variation1.phpt" "ext/standard/tests/strings/setlocale_variation1.phpt"
;; This failing test is skipped on PHP's Travis CI as it is
;; supposedly inaccurate.
"ext/standard/tests/file/disk_free_space_basic.phpt" "ext/standard/tests/file/disk_free_space_basic.phpt"
;; The following test erroneously expect the link
;; count of a sub-directory to increase compared to
;; its parent.
"ext/standard/tests/file/lstat_stat_variation8.phpt" "ext/standard/tests/file/lstat_stat_variation8.phpt"
;; This tests whether microseconds ‘differ enough’ and
;; fails inconsistently on ‘fast’ machines.
"ext/date/tests/bug73837.phpt" "ext/date/tests/bug73837.phpt"
;; XXX: These gd tests fails. Likely because our version
;; is different from the (patched) bundled one.
;; Here, gd quits immediately after "fatal libpng error"; while the
;; test expects it to additionally return a "setjmp" error and warning.
"ext/gd/tests/bug39780_extern.phpt" "ext/gd/tests/bug39780_extern.phpt"
"ext/gd/tests/libgd00086_extern.phpt" "ext/gd/tests/libgd00086_extern.phpt"
;; Extra newline in gd-png output.
"ext/gd/tests/bug45799.phpt" "ext/gd/tests/bug45799.phpt"
;; Test expects generic "gd warning" but gets the actual function name.
"ext/gd/tests/createfromwbmp2_extern.phpt" "ext/gd/tests/createfromwbmp2_extern.phpt"
;; This bug should have been fixed in gd 2.2.2.
;; Is it a regression?
"ext/gd/tests/bug65148.phpt" "ext/gd/tests/bug65148.phpt"
;; This bug should have been fixed in the gd 2.2
;; series. Perhaps a regression introduced by gd
;; 2.3.0?
"ext/gd/tests/bug66590.phpt" "ext/gd/tests/bug66590.phpt"
;; This bug should have been fixed in the php-5.5
;; series. Perhaps a regression introduced by gd
;; 2.3.0?
"ext/gd/tests/bug70102.phpt" "ext/gd/tests/bug70102.phpt"
;; This bug should have been fixed in the php-5.6
;; series. Perhaps a regression introduced by gd
;; 2.3.0?
"ext/gd/tests/bug73869.phpt" "ext/gd/tests/bug73869.phpt"
;; Some WebP related tests fail.
"ext/gd/tests/webp_basic.phpt" "ext/gd/tests/webp_basic.phpt"
"ext/gd/tests/imagecreatefromstring_webp.phpt" "ext/gd/tests/imagecreatefromstring_webp.phpt"
;; Expected error message, but from the wrong function
"ext/gd/tests/bug77269.phpt" "ext/gd/tests/bug77269.phpt"
;; TODO: Enable these when libgd is built with xpm support.
"ext/gd/tests/xpm2gd.phpt" "ext/gd/tests/xpm2gd.phpt"
"ext/gd/tests/xpm2jpg.phpt" "ext/gd/tests/xpm2jpg.phpt"
"ext/gd/tests/xpm2png.phpt" "ext/gd/tests/xpm2png.phpt"
;; Whitespace difference, probably caused by a very
;; long store path
"ext/gd/tests/bug77479.phpt" "ext/gd/tests/bug77479.phpt"
;; Expected invalid XBM but got EOF before image was
;; complete. It's a warning in both cases and test
;; result is the same.
"ext/gd/tests/bug77973.phpt" "ext/gd/tests/bug77973.phpt"
;; Test expects uninitialized value to be false, but
;; instead gets "resource(5) of type (gd)".
"ext/gd/tests/bug79067.phpt" "ext/gd/tests/bug79067.phpt"
;; The following test fails with "The image size
;; differs: expected 114x115, got 117x117".
"ext/gd/tests/bug79068.phpt" "ext/gd/tests/bug79068.phpt"
;; XXX: These iconv tests have the expected outcome,
;; but with different error messages.
;; Expects "illegal character", instead gets "unknown error (84)".
"ext/iconv/tests/bug52211.phpt" "ext/iconv/tests/bug52211.phpt"
"ext/iconv/tests/bug60494.phpt" "ext/iconv/tests/bug60494.phpt"
;; Expects "wrong charset", gets unknown error (22).
"ext/iconv/tests/iconv_strlen_error2.phpt" "ext/iconv/tests/iconv_strlen_error2.phpt"
"ext/iconv/tests/iconv_substr_error2.phpt" "ext/iconv/tests/iconv_substr_error2.phpt"
;; Expects conversion error, gets "error condition Termsig=11".
"ext/iconv/tests/iconv_strpos_error2.phpt" "ext/iconv/tests/iconv_strpos_error2.phpt"
"ext/iconv/tests/iconv_strrpos_error2.phpt" "ext/iconv/tests/iconv_strrpos_error2.phpt"
;; Expects "invalid multibyte sequence" but got
;; "unknown error".
"ext/iconv/tests/bug76249.phpt" "ext/iconv/tests/bug76249.phpt"
;; XXX: These test failures appear legitimate, needs investigation.
;; open_basedir() restriction failure.
"ext/curl/tests/bug61948-unix.phpt" "ext/curl/tests/bug61948-unix.phpt"
;; Expects a false boolean, gets empty array from glob().
"ext/standard/tests/file/bug41655_1.phpt" "ext/standard/tests/file/bug41655_1.phpt"
"ext/standard/tests/file/glob_variation5.phpt" "ext/standard/tests/file/glob_variation5.phpt"
;; The test expects an Array, but instead get the contents(?).
"ext/gd/tests/bug43073.phpt" "ext/gd/tests/bug43073.phpt"
;; imagettftext() returns wrong coordinates.
"ext/gd/tests/bug48732-mb.phpt" "ext/gd/tests/bug48732-mb.phpt"
"ext/gd/tests/bug48732.phpt" "ext/gd/tests/bug48732.phpt"
;; Similarly for imageftbbox().
"ext/gd/tests/bug48801-mb.phpt" "ext/gd/tests/bug48801-mb.phpt"
"ext/gd/tests/bug48801.phpt" "ext/gd/tests/bug48801.phpt"
;; Different expected output from imagecolorallocate().
"ext/gd/tests/bug53504.phpt" "ext/gd/tests/bug53504.phpt"
;; Wrong image size after scaling an image.
"ext/gd/tests/bug73272.phpt" "ext/gd/tests/bug73272.phpt"
;; Expects iconv to detect illegal characters, instead gets
;; "unknown error (84)" and heap corruption(!).
"ext/iconv/tests/bug48147.phpt" "ext/iconv/tests/bug48147.phpt"
;; Expects illegal character ".", gets "=?utf-8?Q?."
"ext/iconv/tests/bug51250.phpt" "ext/iconv/tests/bug51250.phpt"
;; iconv throws "buffer length exceeded" on some string checks.
"ext/iconv/tests/iconv_mime_encode.phpt" "ext/iconv/tests/iconv_mime_encode.phpt"
;; file_get_contents(): iconv stream filter
;; ("ISO-8859-1"=>"UTF-8") unknown error.
"ext/standard/tests/file/bug43008.phpt" "ext/standard/tests/file/bug43008.phpt"
;; Table data not created in sqlite(?).
"ext/pdo_sqlite/tests/bug_42589.phpt" "ext/pdo_sqlite/tests/bug_42589.phpt"
;; Expects an Array with 3 preg_matches; gets 0.
"ext/pcre/tests/bug79846.phpt" "ext/pcre/tests/bug79846.phpt"
;; Expects an empty Array; gets one with " " in it.
"ext/pcre/tests/bug80118.phpt" "ext/pcre/tests/bug80118.phpt"
;; Renicing a process fails in the build environment.
"ext/standard/tests/general_functions/proc_nice_basic.phpt" "ext/standard/tests/general_functions/proc_nice_basic.phpt"
;; Can fail on fast machines?
"Zend/tests/bug74093.phpt")) "Zend/tests/bug74093.phpt"))
;; Accomodate two extra openssl errors flanking the expected one:
;; random number generator:RAND_{load,write}_file:Cannot open file
;; This is due to an invalid $HOME, but changing it in the test
;; still prints the first one & changing it globally is overkill.
(substitute* "ext/openssl/tests/bug80747.phpt" (substitute* "ext/openssl/tests/bug80747.phpt"
((".*error:%s:key size too small.*" match) ((".*error:%s:key size too small.*" match)
(string-append "%s\n" match "%s\n"))) (string-append "%s\n" match "%s\n")))
;; Skip tests requiring network access.
(setenv "SKIP_ONLINE_TESTS" "1") (setenv "SKIP_ONLINE_TESTS" "1")
;; Without this variable, 'make test' passes regardless of failures.
(setenv "REPORT_EXIT_STATUS" "1") (setenv "REPORT_EXIT_STATUS" "1")
;; Skip tests requiring I/O facilities that are unavailable in the
;; build environment
(setenv "SKIP_IO_CAPTURE_TESTS" "1")))) (setenv "SKIP_IO_CAPTURE_TESTS" "1"))))
#:test-target "test")) #:test-target "test"))
(inputs (inputs
@ -368,19 +261,18 @@
`(("pkg-config" ,pkg-config) `(("pkg-config" ,pkg-config)
("bison" ,bison) ("bison" ,bison)
("gettext" ,gettext-minimal) ("gettext" ,gettext-minimal)
("procps" ,procps))) ; for tests ("procps" ,procps)))
(synopsis "PHP programming language") (synopsis "PHP programming language")
(description (description
"PHP (PHP Hypertext Processor) is a server-side (CGI) scripting "PHP (PHP Hypertext Processor) is a server-side (CGI) scripting
language designed primarily for web development but is also used as language designed primarily for web development but is also used as
a general-purpose programming language. PHP code may be embedded into a general-purpose programming language. PHP code may be embedded into
HTML code, or it can be used in combination with various web template HTML code, or it can be used in combination with various web template
systems, web content management systems and web frameworks." ) systems, web content management systems and web frameworks.")
(license (list (license (list
(license:non-copyleft "file://LICENSE") ; The PHP license. (license:non-copyleft "file://LICENSE")
(license:non-copyleft "file://Zend/LICENSE") ; The Zend license. (license:non-copyleft "file://Zend/LICENSE")
license:lgpl2.1 ; ext/mbstring/libmbfl license:lgpl2.1
license:lgpl2.1+ ; ext/bcmath/libbcmath license:lgpl2.1+
license:bsd-2 ; ext/fileinfo/libmagic license:bsd-2
license:expat)))) ; ext/date/lib license:expat))))
php

17
glicid/packages/python-science.scm
View file

@ -2,8 +2,7 @@
#:use-module (guix download) #:use-module (guix download)
#:use-module (guix packages) #:use-module (guix packages)
#:use-module (guix build-system python) #:use-module (guix build-system python)
#:use-module ((guix licenses) #:use-module ((guix licenses) #:prefix license:)
#:prefix license:)
#:use-module (gnu packages python-xyz) #:use-module (gnu packages python-xyz)
#:use-module (gnu packages python-crypto) #:use-module (gnu packages python-crypto)
#:use-module (gnu packages python-build) #:use-module (gnu packages python-build)
@ -18,9 +17,7 @@
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "snuggs" version)) (uri (pypi-uri "snuggs" version))
(sha256 (sha256 (base32 "0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h"))))
(base32
"0yv1wayrw9g6k0c2f721kha7wsv0s1fdlxpf5x7f34iqzq9z272h"))))
(build-system python-build-system) (build-system python-build-system)
(propagated-inputs (list python-numpy python-pyparsing)) (propagated-inputs (list python-numpy python-pyparsing))
(native-inputs (list python-hypothesis python-pytest)) (native-inputs (list python-hypothesis python-pytest))
@ -36,9 +33,7 @@
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "affine" version)) (uri (pypi-uri "affine" version))
(sha256 (sha256 (base32 "1l5x66jdrlhaxp9fllkjzfq3bz4xx1a0yknrzycszmks2mkdwxnn"))))
(base32
"1l5x66jdrlhaxp9fllkjzfq3bz4xx1a0yknrzycszmks2mkdwxnn"))))
(build-system python-build-system) (build-system python-build-system)
(native-inputs (list python-coveralls python-flake8 python-pydocstyle (native-inputs (list python-coveralls python-flake8 python-pydocstyle
python-pytest python-pytest-cov)) python-pytest python-pytest-cov))
@ -47,8 +42,6 @@
(description "Matrices describing affine transformation of the plane.") (description "Matrices describing affine transformation of the plane.")
(license license:bsd-3))) (license license:bsd-3)))
;; un tout petit peu de modifications à faire ici
(define-public python-rasterio (define-public python-rasterio
(package (package
(name "python-rasterio") (name "python-rasterio")
@ -56,9 +49,7 @@
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "rasterio" version)) (uri (pypi-uri "rasterio" version))
(sha256 (sha256 (base32 "1a21k86g325ks0vllzn9ry6pf8gch45bs9z9iq5z1v3na90731ss"))))
(base32
"1a21k86g325ks0vllzn9ry6pf8gch45bs9z9iq5z1v3na90731ss"))))
(build-system python-build-system) (build-system python-build-system)
(arguments (arguments
'(#:tests? #f)) '(#:tests? #f))

21
glicid/packages/python-xyz.scm
View file

@ -42,8 +42,7 @@
(propagated-inputs (list python-markupsafe)) (propagated-inputs (list python-markupsafe))
(home-page "https://palletsprojects.com/p/jinja/") (home-page "https://palletsprojects.com/p/jinja/")
(synopsis "A very fast and expressive template engine.") (synopsis "A very fast and expressive template engine.")
(description (description "This package provides a very fast and expressive template engine.")
"This package provides a very fast and expressive template engine.")
(license #f))) (license #f)))
(define-public python-pyyaml (define-public python-pyyaml
@ -68,9 +67,7 @@
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "setuptools_scm" version)) (uri (pypi-uri "setuptools_scm" version))
(sha256 (sha256 (base32 "09wg4zg30ir1c2cvwqipaz3hwaxz503fgw5zdvaxgakilx2q6l3c"))))
(base32
"09wg4zg30ir1c2cvwqipaz3hwaxz503fgw5zdvaxgakilx2q6l3c"))))
(build-system python-build-system) (build-system python-build-system)
(propagated-inputs (list python-importlib-metadata python-packaging (propagated-inputs (list python-importlib-metadata python-packaging
python-setuptools python-tomli python-setuptools python-tomli
@ -89,20 +86,12 @@
(origin (origin
(method url-fetch) (method url-fetch)
(uri (pypi-uri "podman-compose" version)) (uri (pypi-uri "podman-compose" version))
(sha256 (sha256 (base32 "1rd29mysfdlbvn0m9zfyp2n0v5lch0bsj4fmzyjaal6akw23bcid"))))
(base32 "1rd29mysfdlbvn0m9zfyp2n0v5lch0bsj4fmzyjaal6akw23bcid"))))
(build-system pyproject-build-system) (build-system pyproject-build-system)
(propagated-inputs (list python-dotenv python-pyyaml slirp4netns iptables)) (propagated-inputs (list python-dotenv python-pyyaml slirp4netns iptables))
(native-inputs (list python-black python-flake8 python-pre-commit (native-inputs (list python-black python-flake8 python-pre-commit
python-pylint)) python-pylint))
(home-page "https://github.com/containers/podman-compose") (home-page "https://github.com/containers/podman-compose")
(synopsis "A script to run docker-compose.yml using podman") (synopsis "A script to run docker-compose.yml using podman")
(description (description "This package provides a script to run docker-compose.yml using podman")
"This package provides a script to run docker-compose.yml using podman") (license #f)))
(license #f))
)

2
glicid/packages/r.scm
View file

@ -1,5 +1,3 @@
(define-module (glicid packages r)) (define-module (glicid packages r))
(define-public R (@@ (gnu packages statistics) r-with-tests)) (define-public R (@@ (gnu packages statistics) r-with-tests))
R

56
glicid/packages/science.scm
View file

@ -19,7 +19,6 @@
#:use-module (gnu packages maths) #:use-module (gnu packages maths)
#:use-module (gnu packages mpi) #:use-module (gnu packages mpi)
#:use-module (gnu packages python) #:use-module (gnu packages python)
; #:use-module (past packages python)
#:use-module (gnu packages python-xyz) #:use-module (gnu packages python-xyz)
#:use-module (gnu packages sphinx) #:use-module (gnu packages sphinx)
#:use-module (gnu packages commencement) #:use-module (gnu packages commencement)
@ -37,43 +36,28 @@
(uri (string-append (uri (string-append
"https://downloads.sourceforge.net/project/loki-lib/Loki/Loki%200.1.7/loki-" "https://downloads.sourceforge.net/project/loki-lib/Loki/Loki%200.1.7/loki-"
version ".zip")) version ".zip"))
(sha256 (sha256 (base32 "0p23k4dipk5nnfpvhhqj9apz8rhnd62qdydjmzx8q78sxpwims4w"))))
(base32
"0p23k4dipk5nnfpvhhqj9apz8rhnd62qdydjmzx8q78sxpwims4w"))))
(build-system gnu-build-system) (build-system gnu-build-system)
(inputs `(("gcc-toolchain" ,gcc-toolchain))) (inputs `(("gcc-toolchain" ,gcc-toolchain)))
(synopsis (synopsis "Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms.")
"Loki is a C++ library of designs, containing flexible implementations of common design patterns and idioms.") (description "Loki is the name of a C++ software library written by Andrei Alexandrescu as part of his book Modern C++ Design.
(description
"Loki is the name of a C++ software library written by Andrei Alexandrescu as part of his book Modern C++ Design.
The library makes extensive use of C++ template metaprogramming and implements several commonly used tools: typelist, functor, singleton, smart pointer, object factory, visitor and multimethods.") The library makes extensive use of C++ template metaprogramming and implements several commonly used tools: typelist, functor, singleton, smart pointer, object factory, visitor and multimethods.")
(home-page "http://loki-lib.sourceforge.net/index.php?n=Main.HomePage") (home-page "http://loki-lib.sourceforge.net/index.php?n=Main.HomePage")
(license gpl3+))) (license gpl3+)))
;; was commented out… guix repl is ok… so uncomment right now
(define-public yade-2022.01a (define-public yade-2022.01a
(package (package
(name "yade") (name "yade")
(version "2022.01a") (version "2022.01a")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "https://gitlab.com/yade-dev/trunk/-/archive/2022.01a/trunk-" version ".tar.gz"))
"https://gitlab.com/yade-dev/trunk/-/archive/2022.01a/trunk-" (sha256 (base32 "0k4hnvi70cqzl0q54kkbij6jwxydhfwcacp9s49n3fkaf1dihxiv"))))
version ".tar.gz"))
(sha256
(base32
"0k4hnvi70cqzl0q54kkbij6jwxydhfwcacp9s49n3fkaf1dihxiv"))))
(build-system cmake-build-system) (build-system cmake-build-system)
(arguments (arguments
`(#:configure-flags (list "-DENABLE_POTENTIAL_BLOCKS=OFF" `(#:configure-flags (list "-DENABLE_POTENTIAL_BLOCKS=OFF"
(string-append "-DCMAKE_INSTALL_PREFIX=" (string-append "-DCMAKE_INSTALL_PREFIX=" (assoc-ref %outputs "out"))
(assoc-ref %outputs "out")) (string-append "-DQGLVIEWER_INCLUDE_DIR=" (assoc-ref %build-inputs "libqglviewer")))
(string-append "-DQGLVIEWER_INCLUDE_DIR="
(assoc-ref %build-inputs
"libqglviewer")))
;; (string-append "-DQGLVIEWER_INCLUDE_DIR="
;; libqglviewer))))
#:phases (modify-phases %standard-phases #:phases (modify-phases %standard-phases
(add-after 'unpack 'post-unpack (add-after 'unpack 'post-unpack
(lambda* (#:key outputs inputs #:allow-other-keys) (lambda* (#:key outputs inputs #:allow-other-keys)
@ -85,13 +69,10 @@
(let ((out (assoc-ref outputs "out"))) (let ((out (assoc-ref outputs "out")))
(apply invoke "cmake" "../" configure-flags))))) (apply invoke "cmake" "../" configure-flags)))))
#:tests? #f)) #:tests? #f))
;; (lambda _ (invoke
;; "cmake" "../trunk"
;; configure-flags))))))
(propagated-inputs `(("gdb" ,gdb) (propagated-inputs `(("gdb" ,gdb)
("sqlite" ,sqlite) ("sqlite" ,sqlite)
("openmpi" ,openmpi) ("openmpi" ,openmpi)
("python" ,python) ;; beware python 3.10 is *NOT* supported ("python" ,python)
("python-numpy" ,python-numpy) ("python-numpy" ,python-numpy)
("python-matplotlib" ,python-matplotlib) ("python-matplotlib" ,python-matplotlib)
("python-sphinx" ,python-sphinx) ("python-sphinx" ,python-sphinx)
@ -106,15 +87,11 @@
("python-qtpy" ,python-qtpy))) ("python-qtpy" ,python-qtpy)))
(inputs `(("boost" ,boost) (inputs `(("boost" ,boost)
("qtbase-5" ,qtbase-5) ("qtbase-5" ,qtbase-5)
;; ("qt" ,qt)
("freeglut" ,freeglut) ("freeglut" ,freeglut)
("gts" ,gts) ("gts" ,gts)
("pkg-config" ,pkg-config) ("pkg-config" ,pkg-config)
("libqglviewer" ,libqglviewer) ("libqglviewer" ,libqglviewer)
("eigen" ,eigen) ("eigen" ,eigen)
;; ("loki" ,loki)
;; ("vtk" ,vtk)
;; ("qtwebkit" ,qtwebkit)
("openblas" ,openblas) ("openblas" ,openblas)
("suitesparse" ,suitesparse) ("suitesparse" ,suitesparse)
("gcc-toolchain" ,gcc-toolchain) ("gcc-toolchain" ,gcc-toolchain)
@ -124,10 +101,8 @@
("qtwebengine" ,qtwebengine) ("qtwebengine" ,qtwebengine)
("mpfr" ,mpfr))) ("mpfr" ,mpfr)))
(synopsis (synopsis "Yade is an extensible open-source framework for discrete numerical models, focused on Discrete Element Method.")
"Yade is an extensible open-source framework for discrete numerical models, focused on Discrete Element Method.") (description "Yade is an extensible open-source framework for discrete numerical models, focused on Discrete Element Method. The computation parts are written in c++ using flexible object model, allowing independent implementation of new algorithms and interfaces. Python is used for rapid and concise scene construction, simulation control, postprocessing and debugging.")
(description
"Yade is an extensible open-source framework for discrete numerical models, focused on Discrete Element Method. The computation parts are written in c++ using flexible object model, allowing independent implementation of new algorithms and interfaces. Python is used for rapid and concise scene construction, simulation control, postprocessing and debugging.")
(home-page "https://www.yade-dem.org/") (home-page "https://www.yade-dem.org/")
(license gpl3+))) (license gpl3+)))
@ -137,20 +112,13 @@
(version "2023.02a") (version "2023.02a")
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append (uri (string-append "https://gitlab.com/yade-dev/trunk/-/archive/2023.02a/trunk-" version ".tar.gz"))
"https://gitlab.com/yade-dev/trunk/-/archive/2023.02a/trunk-" (sha256 (base32 "1hdhxyaqdavrwpvam759835zyhn49c777kclz9p720pjlw55lszp"))))))
version ".tar.gz"))
(sha256
(base32
"1hdhxyaqdavrwpvam759835zyhn49c777kclz9p720pjlw55lszp"))))))
(define-public yade yade-2022.01a) (define-public yade yade-2022.01a)
(define-public yade-glicid-waves (define-public yade-glicid-waves
(package (package
; (inherit (transform-package ((instead-of "openmpi-glicid-waves" openmpi)
; yade) "waves"))
(inherit yade) (inherit yade)
(name "yade-glicid-waves"))) (name "yade-glicid-waves")))

38
glicid/packages/storage.scm
View file

@ -3,60 +3,36 @@
(use-modules (guix packages) (use-modules (guix packages)
(guix git-download) (guix git-download)
(guix download) (guix download)
; (guix utils)
(gnu packages) (gnu packages)
(gnu packages storage) (gnu packages storage)
(gnu packages crypto) (gnu packages crypto)
(gnu packages python-xyz) ; wcwidth (gnu packages python-xyz)
(gnu packages linux) ; liburing (gnu packages linux)
) )
(define-public ceph-upstream (define-public ceph-upstream
(package (package
(inherit ceph) (inherit ceph)
(name "ceph-upstream") (name "ceph-upstream")
; (version "17.2.7releasetag")
(version "17.2.7") (version "17.2.7")
; (source (origin
; (method git-fetch)
; (uri (git-reference
; (url "https://github.com/ceph/ceph.git")
; (commit "b12291d110049b2f35e32e0de30d70e9a4c060d2") ;; last version 20240906
;; (branch "quincy")
;
; (recursive? #t)))
; (file-name version)
(source (origin (source (origin
(method url-fetch) (method url-fetch)
(uri (string-append "https://download.ceph.com/tarballs/ceph-" (uri (string-append "https://download.ceph.com/tarballs/ceph-" version ".tar.gz"))
version ".tar.gz")) (sha256 (base32 "1612424yrf39dz010ygz8k5x1vc8731549ckfj1r39dg00m62klp"))
(sha256
(base32
"1612424yrf39dz010ygz8k5x1vc8731549ckfj1r39dg00m62klp"))
(patches (patches
(search-patches (search-patches "ceph-disable-cpu-optimizations.patch"))
"ceph-disable-cpu-optimizations.patch"))
(modules '((guix build utils))) (modules '((guix build utils)))
(snippet (snippet
'(for-each delete-file-recursively '(for-each delete-file-recursively
'(;; TODO: Unbundle these: '(
"src/arrow" "src/arrow"
;;"src/isa-l"
;;"src/lua"
;;"src/xxHash"
;;"src/zstd"
;;"src/civetweb"
"src/c-ares" "src/c-ares"
"src/fmt" "src/fmt"
"src/googletest" "src/googletest"
"src/rapidjson" "src/rapidjson"
"src/spdk" "src/spdk"
"src/rocksdb" "src/rocksdb"
; "src/boost" ; inexistant ??
"src/utf8proc"))))) "src/utf8proc")))))
(inputs (modify-inputs (package-inputs ceph) (append liburing libxcrypt))) (inputs (modify-inputs (package-inputs ceph) (append liburing libxcrypt)))
(native-inputs (modify-inputs (package-native-inputs ceph) (native-inputs (modify-inputs (package-native-inputs ceph)
(append python-wcwidth))))) (append python-wcwidth)))))

6
glicid/packages/virtualization.scm
View file

@ -8,10 +8,8 @@
#:use-module (guix download) #:use-module (guix download)
#:use-module (glicid utils)) #:use-module (glicid utils))
(define-public qemu-latest (define-public qemu-latest qemu)
qemu) (define-public qemu-minimal-latest qemu-minimal)
(define-public qemu-minimal-latest
qemu-minimal)
(define-public qemu-with-rbd (define-public qemu-with-rbd
(package (package

2
glicid/packages/vpn.scm
View file

@ -63,5 +63,3 @@ Secure. NetBird enables secure remote access by applying granular access policie
(description "netbird client ui program. dirty version from github artifacts.") (description "netbird client ui program. dirty version from github artifacts.")
(home-page %netbird-homepage) (home-page %netbird-homepage)
(license license:expat))) (license license:expat)))
netbird-cli

5
glicid/services/rc-local.scm
View file

@ -11,15 +11,12 @@
rc-local-configuration? rc-local-configuration?
rc-local-service rc-local-service
rc-local-service-type rc-local-service-type
%default-rc-multiplelocal-conf %default-rc-multiplelocal-conf
rc-multiplelocal-configuration rc-multiplelocal-configuration
rc-multiplelocal-configuration? rc-multiplelocal-configuration?
rc-multiplelocal-service rc-multiplelocal-service
rc-multiplelocal-service-type rc-multiplelocal-service-type
))
))
(define %default-rc-local-conf (define %default-rc-local-conf
(plain-file "rc-local" " (plain-file "rc-local" "

20
glicid/services/virtualization.scm
View file

@ -3,17 +3,10 @@
#:use-module (gnu services shepherd) #:use-module (gnu services shepherd)
#:use-module ((gnu services virtualization) #:prefix gnu:) #:use-module ((gnu services virtualization) #:prefix gnu:)
#:use-module ((gnu packages virtualization) #:prefix gnu:) #:use-module ((gnu packages virtualization) #:prefix gnu:)
; #:use-module (guix records) #:use-module (guix gexp)
; #:use-module (guix utils) #:use-module (gnu services configuration)
#:use-module (guix gexp) ;; file-like?
#:use-module (gnu services configuration) ;; define-configuration
#:export (qemu-guest-agent-service-type) #:export (qemu-guest-agent-service-type)
) )
(define gnu:qemu-guest-agent-configuration-qemu (@@ (gnu services virtualization) qemu-guest-agent-configuration-qemu)) (define gnu:qemu-guest-agent-configuration-qemu (@@ (gnu services virtualization) qemu-guest-agent-configuration-qemu))
(define gnu:qemu-guest-agent-configuration-device (@@ (gnu services virtualization) qemu-guest-agent-configuration-device)) (define gnu:qemu-guest-agent-configuration-device (@@ (gnu services virtualization) qemu-guest-agent-configuration-device))
@ -24,8 +17,7 @@
(list (list
(shepherd-service (shepherd-service
(provision '(qemu-guest-agent)) (provision '(qemu-guest-agent))
(requirement '(udev)) ;; GLiCID (requirement '(udev))
(documentation "Run the QEMU guest agent.") (documentation "Run the QEMU guest agent.")
(start #~(make-forkexec-constructor (start #~(make-forkexec-constructor
`(,(string-append #$qemu "/bin/qemu-ga") `(,(string-append #$qemu "/bin/qemu-ga")
@ -36,12 +28,10 @@
#:log-file "/var/log/qemu-ga.log")) #:log-file "/var/log/qemu-ga.log"))
(stop #~(make-kill-destructor)))))) (stop #~(make-kill-destructor))))))
(define qemu-guest-agent-service-type (define qemu-guest-agent-service-type
(service-type (service-type
(inherit gnu:qemu-guest-agent-service-type) (inherit gnu:qemu-guest-agent-service-type)
(extensions (extensions
(list (service-extension shepherd-root-service-type (list (service-extension shepherd-root-service-type
qemu-guest-agent-shepherd-service))) qemu-guest-agent-shepherd-service)))))
))

8
glicid/system/file-systems.scm
View file

@ -1,9 +1,8 @@
(define-module (glicid system file-systems) (define-module (glicid system file-systems)
#:use-module (gnu system file-systems) #:use-module (gnu system file-systems)
#:export (%cgroups) )
)
(define %cgroups (define-public %cgroups
(append (list (append (list
(file-system (file-system
(device "none") (device "none")
@ -59,5 +58,4 @@
(create-mount-point? #t) (create-mount-point? #t)
(dependencies (list (car %control-groups))) (dependencies (list (car %control-groups)))
) )
) %control-groups ) ) %control-groups ))
)

18
glicid/utils.scm
View file

@ -6,33 +6,27 @@
#:use-module (glicid packages gcc) #:use-module (glicid packages gcc)
#:use-module (gnu packages commencement) #:use-module (gnu packages commencement)
#:use-module (gnu packages) #:use-module (gnu packages)
#:export ( )
latest-version
gcc11-instead-of-gcc
transform-package
instead-of
touch
))
(define (latest-version v1 v2) (define-public (latest-version v1 v2)
(case (version-compare (package-version v1) (package-version v2)) (case (version-compare (package-version v1) (package-version v2))
((>) v1) ((>) v1)
((=) v1) ((=) v1)
((<) v2))) ((<) v2)))
(define gcc11-instead-of-gcc (define-public gcc11-instead-of-gcc
(package-input-rewriting (package-input-rewriting
`((,gcc-toolchain . ,gcc-toolchain-11) `((,gcc-toolchain . ,gcc-toolchain-11)
(,gfortran-toolchain . ,gfortran-toolchain-11) (,gfortran-toolchain . ,gfortran-toolchain-11)
))) )))
(define (transform-package original-package suffix) (define-public (transform-package original-package suffix)
(package (package
(inherit original-package) (inherit original-package)
(name (string-append (package-name original-package) "-" suffix )))) (name (string-append (package-name original-package) "-" suffix ))))
(define (instead-of package-a-spec package-b) (define-public (instead-of package-a-spec package-b)
(package-input-rewriting/spec `( (,package-a-spec . ,(const package-b))))) (package-input-rewriting/spec `( (,package-a-spec . ,(const package-b)))))
(define (touch filename) (define-public (touch filename)
(call-with-output-file file-name (const #t))) (call-with-output-file file-name (const #t)))