mirror of
https://gitlab.univ-nantes.fr/glicid-public/guix-glicid.git
synced 2025-04-30 06:08:37 +02:00
1005 lines
29 KiB
Scheme
1005 lines
29 KiB
Scheme
(define-module (gnu packages glicid)
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#:use-module (guix packages)
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#:use-module (guix download)
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#:use-module (guix git-download)
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#:use-module (guix build-system gnu)
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#:use-module (guix build-system cmake)
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; #:use-module (guix licenses)
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#:use-module (gnu packages gawk)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages commencement)
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#:use-module (guix build-system python)
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#:use-module ((guix licenses) #:prefix license:)
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#:use-module ((guix utils) #:select (target-64bit?))
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#:use-module (gnu packages)
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#:use-module (gnu packages admin)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages base)
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#:use-module (gnu packages freeipmi)
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#:use-module (gnu packages linux)
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#:use-module (gnu packages mpi)
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#:use-module (gnu packages perl)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages parallel)
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#:use-module (gnu packages storage)
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#:use-module (gnu packages networking)
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#:use-module (gnu packages gtk)
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#:use-module (gnu packages python)
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#:use-module (gnu packages python-science)
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#:use-module (gnu packages python-web)
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#:use-module (gnu packages python-xyz)
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#:use-module (gnu packages readline)
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#:use-module (gnu packages tcl)
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#:use-module (gnu packages tls)
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#:use-module (gnu packages commencement)
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#:use-module (gnu packages gcc)
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#:use-module (gnu packages chemistry)
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#:use-module (gnu packages sphinx)
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#:use-module (srfi srfi-1)
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#:use-module (gnu packages mpi)
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#:use-module (gnu packages sssd)
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#:use-module (gnu packages fabric-management)
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#:use-module (gnu packages benchmark)
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#:use-module (gnu packages messaging)
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#:use-module (gnu packages web)
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#:use-module (gnu packages gnome)
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#:use-module (gnu packages cluster)
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#:use-module (gnu packages libevent)
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#:use-module (gnu packages xorg)
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#:use-module (gnu packages fontutils)
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#:use-module (gnu packages flex)
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#:use-module (gnu packages bison)
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#:use-module (gnu packages pkg-config)
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#:use-module (gnu packages autotools)
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#:use-module (gnu packages fontutils)
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#:use-module (guix build-system gnu)
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#:use-module (gnu packages image)
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#:use-module (gnu packages maths)
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#:use-module (guix utils)
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#:use-module (gnu packages cmake)
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)
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(define* (custom-gcc gcc name languages
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#:optional
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(search-paths (package-native-search-paths gcc))
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#:key (separate-lib-output? #t))
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"Return a custom version of GCC that supports LANGUAGES. Use SEARCH-PATHS as the 'native-search-paths' field."
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(package (inherit gcc)
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(name name)
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(outputs (if separate-lib-output?
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(package-outputs gcc)
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(delete "lib" (package-outputs gcc))))
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(native-search-paths search-paths)
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(properties (alist-delete 'hidden? (package-properties gcc)))
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(arguments
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(substitute-keyword-arguments (package-arguments gcc)
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((#:modules modules %gnu-build-system-modules)
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`(,@modules
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(srfi srfi-1)
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(srfi srfi-26)
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(ice-9 regex)))
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((#:configure-flags flags)
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`(cons (string-append "--enable-languages="
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,(string-join languages ","))
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(remove (cut string-match "--enable-languages.*" <>)
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,flags)))
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((#:phases phases)
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`(modify-phases ,phases
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(add-after 'install 'remove-broken-or-conflicting-files
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(lambda* (#:key outputs #:allow-other-keys)
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(for-each delete-file
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(find-files (string-append (assoc-ref outputs "out") "/bin")
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".*(c\\+\\+|cpp|g\\+\\+|gcov|gcc|gcc-.*)"))
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#t))))))))
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(define %generic-search-paths
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;; This is the language-neutral search path for GCC. Entries in $CPATH are
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;; not considered "system headers", which means GCC can raise warnings for
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;; issues in those headers. 'CPATH' is the only one that works for
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;; front-ends not in the C family.
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(list (search-path-specification
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(variable "CPATH")
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(files '("include")))
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(search-path-specification
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(variable "LIBRARY_PATH")
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(files '("lib" "lib64")))))
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(define-public gfortran-11
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(hidden-package
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(custom-gcc gcc-11 "gfortran" '("fortran")
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%generic-search-paths)))
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(define-public gfortran-10
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(hidden-package
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(custom-gcc gcc-10 "gfortran" '("fortran")
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%generic-search-paths)))
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(define-public gfortran-toolchain-10
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(package (inherit (make-gcc-toolchain gfortran-10))
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(synopsis "Complete GCC tool chain for fortean lang development")
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(description "This package provides a complete GCC tool chain for
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fortran lang development to be installed in user profiles. This includes
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fortran, as well as libc (headers and binaries, plus debugging symbols
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in the @code{debug} output), and binutils.")))
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(define-public gfortran-toolchain-11
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(package (inherit (make-gcc-toolchain gfortran-11))
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(synopsis "Complete GCC tool chain for fortean lang development")
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(description "This package provides a complete GCC tool chain for
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fortran lang development to be installed in user profiles. This includes
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fortran, as well as libc (headers and binaries, plus debugging symbols
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in the @code{debug} output), and binutils.")))
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;;;;;;;;
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(define-public glicid-pmix
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(package
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(name "glicid-pmix-3.1.5")
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(version "3.1.5")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://github.com/openpmix/openpmix/releases/download/v" version "/pmix-" version ".tar.bz2"))
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(sha256 (base32 "1xswdkfcrw123ghcr9gmrb852nzjbl4i6qwrid3xyma42yal34w8"))
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)
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)
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(build-system gnu-build-system)
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(arguments
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`(#:configure-flags
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(list
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(string-append "--with-hwloc=" (assoc-ref %build-inputs "hwloc") )
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)
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)
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)
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(synopsis "MPIX lib")
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(description "MPIX. More to come. FIXIT")
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(home-page "https://www.gnu.org/software/hello/")
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(license license:gpl3+)
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(inputs `(
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("libevent", libevent)
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("hwloc" ,hwloc-2 "lib")
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("perl", perl)
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("gcc", gcc-11)
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)
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)
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)
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)
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(define-public glicid-custom-slurm-19.05
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(package
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(inherit slurm)
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(name "glicid-custom-slurm-19.05")
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(version "19.05.6")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://download.schedmd.com/slurm/slurm-" version ".tar.bz2"))
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(sha256 (base32 "1kj79r8hng5gp98ickgvj3im4gr19nzd3p3p8g6rl75axb8jin7h"))
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))
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(arguments
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`(#:configure-flags
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(list "--enable-pam" "--sysconfdir=/etc/slurm"
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"--disable-static"
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(string-append "--with-freeipmi=" (assoc-ref %build-inputs "freeipmi"))
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(string-append "--with-hwloc=" (assoc-ref %build-inputs "hwloc"))
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(string-append "--with-json=" (assoc-ref %build-inputs "json-c"))
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(string-append "--with-munge=" (assoc-ref %build-inputs "munge"))
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(string-append "--with-pmix=" (assoc-ref %build-inputs "glicid-pmix"))
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;; 32-bit support is marked as deprecated and needs to be
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;; explicitly enabled.
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;;;; ,@(if (target-64bit?) '() '("--enable-deprecated"))
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)
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)
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)
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(inputs `(("gtk+-2" ,gtk+-2)
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("gcc", gcc-11)
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("glicid-pmix", glicid-pmix)
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,@(package-inputs slurm)
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))
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(propagated-inputs
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`(
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("sssd" ,sssd)
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))
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))
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(define-public glicid-custom-slurm-20.02
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(package
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(inherit glicid-custom-slurm-19.05)
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(name "glicid-custom-slurm-20.02")
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(version "20.02.7")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://download.schedmd.com/slurm/slurm-" version ".tar.bz2"))
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(sha256 (base32 "1khlv69q41chgkcs1i7l651hvyx8sz3j9yhjbgky3gpqrgrmz1h6"))
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))
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))
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(define-public glicid-custom-slurm-20.11
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(package
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(inherit glicid-custom-slurm-20.02)
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(name "glicid-custom-slurm-20.11")
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(version "20.11.7")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://download.schedmd.com/slurm/slurm-" version ".tar.bz2"))
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(sha256 (base32 "1fdjihg1x7ks5l77yjv14a4mg6r0v8c3zk1dcxkhrhq3n4dc9nbs"))
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))
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))
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(define-public glicid-librdkafka-09
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(package
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(inherit librdkafka)
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(name "glicid-librdkafka-09")
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(version "0.9.2")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://github.com/edenhill/librdkafka/archive/v" version ".tar.gz"))
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(sha256 (base32 "0938yn1msaq8xcj5z7b3jcdy6rslh9kxmvz01r8rdcgbarlvchy2"))
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))
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))
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(define-public glicid-x2go
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(package
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(name "glicid-x2go")
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(version "4.1.0.3")
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(source
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(origin
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(method url-fetch)
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(uri (string-append "https://code.x2go.org/releases/source/x2goserver/x2goserver-" version ".tar.gz"))
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(sha256 (base32 "1l6wd708kbipib4ldprfiihqmj4895nifg0bkws4x97majislxk7"))
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))
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(native-inputs
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`(("autoconf" ,autoconf)
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("automake" ,automake)
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("libtool" ,libtool)))
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(inputs
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`(("perl" , perl)))
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(build-system gnu-build-system)
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(synopsis "X2go")
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(description "X2go")
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(license "not checked")
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(home-page "https://wiki.x2go.org")
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)
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)
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;(define-public glicid-gromacs-openmpi
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; (package
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; (inherit gromacs)
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; (name "glicid-gromacs-openmpi")
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; (inputs `(("openmpi", openmpi)
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; ,@(package-inputs gromacs)))
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; (build-system cmake-build-system)
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; (arguments
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; `(#:configure-flags configure-flags)
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; (append configure-flags (list "-DGMX_MPI=on"
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; "-DCMAKE_C_COMPILER=mpicc"
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; "-DCMAKE_CXX_COMPILER=mpiicxx"
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; ))
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; )
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; )
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;)
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(define-public glicid-gromacs-openmpi
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(package
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(inherit gromacs)
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(name "glicid-gromacs-openmpi")
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(inputs `(("openmpi", openmpi)
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;; ("openssh", openssh) ;; only for tests... disabled now
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,@(package-inputs gromacs)))
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(build-system cmake-build-system)
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(arguments
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`(#:configure-flags
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(list "-DGMX_DEVELOPER_BUILD=on" ; Needed to run tests
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;; Unbundling
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"-DGMX_USE_LMFIT=EXTERNAL"
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"-DGMX_BUILD_OWN_FFTW=off"
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"-DGMX_EXTERNAL_BLAS=on"
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"-DGMX_EXTERNAL_LAPACK=on"
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"-DGMX_EXTERNAL_TNG=on"
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"-DGMX_EXTERNAL_ZLIB=on"
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"-DGMX_EXTERNAL_TINYXML2=on"
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;; special glicid
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"-DGMX_MPI=on"
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"-DCMAKE_C_COMPILER=mpicc"
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"-DCMAKE_CXX_COMPILER=mpicxx"
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"-DGMX_DOUBLE=off"
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"-DGMX_OPENMP=on"
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"-DGMX_SIMD=AVX2_256"
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(string-append "-DTinyXML2_DIR="
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(assoc-ref %build-inputs "tinyxml2"))
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;; Workaround for cmake/FindSphinx.cmake version parsing that does
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;; not understand the guix-wrapped `sphinx-build --version' answer
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(string-append "-DSPHINX_EXECUTABLE_VERSION="
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,(package-version python-sphinx)))
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#:tests? #f
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#:phases
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(modify-phases %standard-phases
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(add-after 'unpack 'fixes
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(lambda* (#:key inputs #:allow-other-keys)
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;; Still bundled: part of gromacs, source behind registration
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;; but free software anyways
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;;(delete-file-recursively "src/external/vmd_molfile")
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;; Still bundled: threads-based OpenMPI-compatible fallback
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;; designed to be bundled like that
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;;(delete-file-recursively "src/external/thread_mpi")
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;; Unbundling
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(delete-file-recursively "src/external/lmfit")
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(delete-file-recursively "src/external/clFFT")
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(delete-file-recursively "src/external/fftpack")
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(delete-file-recursively "src/external/build-fftw")
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(delete-file-recursively "src/external/tng_io")
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(delete-file-recursively "src/external/tinyxml2")
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(delete-file-recursively "src/external/googletest")
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(copy-recursively (assoc-ref inputs "googletest-source")
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"src/external/googletest")
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;; This test warns about the build host hardware, disable
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(substitute* "src/gromacs/hardware/tests/hardwaretopology.cpp"
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(("TEST\\(HardwareTopologyTest, HwlocExecute\\)")
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"void __guix_disabled()"))
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#t)))))
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)
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)
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;; pour futures customisations.
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;(define-public glicid-openmpi-gcc-10
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; (package
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; (inherit openmpi)
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; (name "glicid-openpmi-gcc-10")
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; (inputs `(("gcc-10", gcc-10)
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; ("gfortran-11", gfortran-11)
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; ,@(package-inputs openmpi)))
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; )
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;)
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(define-public glicid-rdma-core
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(package
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(inherit rdma-core)
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(name "glicid-rdma-core")
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(version "31.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/linux-rdma/rdma-core"
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"/releases/download/v" version "/rdma-core-"
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version ".tar.gz"))
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(sha256
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(base32
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"02ym93k6khfmzm9rml79x9zh1dy8231sygw16r287mhwp0x9mbji"))))
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)
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)
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(define-public glicid-rdma-core-gcc-11
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(package
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(inherit rdma-core)
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(name "glicid-rdma-core-gcc-11")
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(version "32.0")
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(source (origin
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(method url-fetch)
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(uri (string-append "https://github.com/linux-rdma/rdma-core"
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"/releases/download/v" version "/rdma-core-"
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version ".tar.gz"))
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||
(sha256
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||
(base32
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"1z1i741bcn9vchmkjs8nxj0c0bw0jr53zj74l839n2wrb45f55w1"))))
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(inputs `(("gcc-11", gcc-11)
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,@(package-inputs rdma-core)))
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)
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)
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(define-public glicid-libfabric-gcc-11
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(package
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(inherit libfabric)
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(name "glicid-libfabric-gcc-11")
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(version "1.11.2")
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(source
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(origin
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||
(method url-fetch)
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||
(uri
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||
(string-append "https://github.com/ofiwg/libfabric/releases/download/v"
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||
version "/libfabric-" version ".tar.bz2"))
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||
(sha256
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||
(base32 "1nnpfkwxhim2nqjkb1vwrb4wj4j3l6w6yvvy69fqam2snlhshazz"))))
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||
|
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(inputs `(("gcc-11", gcc-11)
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,@(package-inputs libfabric)))
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||
)
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||
)
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(define-public glicid-ucx-gcc-11
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(package
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(inherit ucx)
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(name "glicid-ucx-gcc-11")
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(version "1.10.0")
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(source
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||
(origin
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(method url-fetch)
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(uri (string-append "https://github.com/openucx/ucx/releases/download/v" version "/ucx-" version ".tar.gz" ))
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(sha256 (base32 "0bdrbp86snq5z0y66zzxs7ig33g9h59kag11rc1lqwll3d5y51dq"))
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))
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|
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(inputs `(("gcc-11", gcc-11)
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("gfortran-11", gfortran-11)
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,@(package-inputs ucx)))
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)
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)
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(define-public glicid-ucx-gcc-10
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(package
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(inherit ucx)
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(name "glicid-ucx-gcc-10")
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(version "1.9.0")
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(source
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||
(origin
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(method url-fetch)
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(uri (string-append "https://github.com/openucx/ucx/releases/download/v" version "/ucx-" version ".tar.gz" ))
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(sha256 (base32 "1yrmwvjxi3najax1wz4irpzxns6cp74ksdx4i1049mf03n2ci8m7"))
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))
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|
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(inputs `(("gcc-10", gcc-10)
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("gfortran-10", gfortran-10)
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,@(package-inputs ucx)))
|
||
)
|
||
)
|
||
|
||
|
||
|
||
(define-public glicid-openmpi-gcc-11
|
||
(package
|
||
(inherit openmpi)
|
||
(name "glicid-openpmi-gcc-11")
|
||
(version "4.1.1")
|
||
; (source
|
||
; (origin
|
||
; (method url-fetch)
|
||
; (uri (string-append "https://download.open-mpi.org/release/open-mpi/v4.1/openmpi-" version ".tar.gz"))
|
||
; (sha256 (base32 "02hlg2pgk1np78dqlplwd5qcgrrymy8s49ng4sdrscqmvp1ng112"))
|
||
; ))
|
||
|
||
(inputs `(("gcc-11", gcc-11)
|
||
("gfortran-11", gfortran-11)
|
||
("glicid-ucx-gcc-11",glicid-ucx-gcc-11)
|
||
;; ("glicid-rdma-core",glicid-rdma-core) ;;; segfault !!!
|
||
,@(package-inputs openmpi)))
|
||
)
|
||
)
|
||
|
||
(define-public glicid-intel-mpi-benchmarks
|
||
(package
|
||
(inherit intel-mpi-benchmarks/openmpi)
|
||
(name "glicid-intel-mpi-benchmarks")
|
||
(inputs `(("glicid-openmpi-gcc-11", glicid-openmpi-gcc-11)
|
||
("gcc",gcc-11)
|
||
,@(package-inputs intel-mpi-benchmarks/openmpi)))
|
||
)
|
||
)
|
||
|
||
|
||
|
||
|
||
(define-public glicid-gromacs-gcc-11
|
||
(package
|
||
(inherit gromacs)
|
||
(name "glicid-gromacs-gcc-11")
|
||
(version "2020.3")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "http://ftp.gromacs.org/pub/gromacs/gromacs-" version ".tar.gz"))
|
||
(sha256 (base32 "1acjrhcfzpqy2dncblhj97602jbg9gdha4q1bgji9nrj25lq6cch"))
|
||
))
|
||
|
||
(inputs `(("gcc-11", gcc-11)
|
||
("gfortran-11", gfortran-11)
|
||
("glicid-openmpi-gcc-11", glicid-openmpi-gcc-11)
|
||
,@(package-inputs gromacs)))
|
||
))
|
||
|
||
|
||
(define-public glicid-python-nbxmpp
|
||
(package
|
||
(inherit python-nbxmpp)
|
||
(name "glicid-python-nbxmpp")
|
||
(version "1.0.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (pypi-uri "nbxmpp" version))
|
||
(sha256
|
||
(base32
|
||
"0vw5drr077w9ks4crnw6pwa4735ycyjdcm54knc3w4in4x5027wr"))))
|
||
|
||
))
|
||
|
||
|
||
(define-public glicid-gajim
|
||
(package
|
||
(inherit gajim)
|
||
(name "glicid-gajim")
|
||
(version "1.2.2")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://gajim.org/downloads/1.2/gajim-" version ".tar.gz"))
|
||
(sha256 (base32 "1gfcp3b5nq43xxz5my8vfhfxnnli726j3hzcgwh9fzrzzd9ic3gx"))
|
||
))
|
||
|
||
(inputs `(("python-packaging", python-packaging)
|
||
("glicid-python-nbxmpp", glicid-python-nbxmpp)
|
||
("python-css-parser", python-css-parser)
|
||
,@(package-inputs gajim)))
|
||
|
||
(propagated-inputs
|
||
`(
|
||
("glib-networking" ,glib-networking)
|
||
("libsoup" ,libsoup)
|
||
("gnutls" , gnutls)
|
||
))
|
||
))
|
||
|
||
|
||
;;26.2 is ok : "1ilns8spik1xz2n668pf0awp4n7b3q7n886ml0q3bslb8fmqfl0i"
|
||
;;27.1 is ok : "1mqaxzsbhm7kh20dwdrapvx4x86wkbk1wgb2yyjz73l6bymv7vir"
|
||
;;28.1 is ok : "04y7wm2an842hf6idlbjvmiqnlh05xb2i9rhdb5ifzw6n3ciz5nr"
|
||
;; 30.0 crash : "1ycvd8sp3giwjbp0x3nvb8q2wrdc50s7lmzf44b9l51qgcnvvq93"
|
||
;; 31.0 crash :
|
||
;; 32.0 crash : "1z1i741bcn9vchmkjs8nxj0c0bw0jr53zj74l839n2wrb45f55w1"
|
||
;; 33.0 crash : "0cnmw04z68x042nkqxg57wijzkf9ysmvr8xxidxhxz0mxwx9impg"
|
||
|
||
(define-public glicid-specific-rdma-core-gcc-11
|
||
(package
|
||
(inherit rdma-core)
|
||
(name "glicid-specific-rdma-core-gcc-11")
|
||
(version "34.0")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/linux-rdma/rdma-core"
|
||
"/releases/download/v" version "/rdma-core-"
|
||
version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1s4b80jzdi2m6j5aix3mxl6iafgbqp88pfxy7568zxwc8rkcz71x"))))
|
||
(inputs `(("gcc", gcc-11)
|
||
,@(package-inputs rdma-core)))
|
||
|
||
)
|
||
)
|
||
|
||
(define-public glicid-specific-libfabric-gcc-11
|
||
(package
|
||
(inherit libfabric)
|
||
(name "glicid-specific-libfabric-gcc-11")
|
||
(version "1.12.1")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri
|
||
(string-append "https://github.com/ofiwg/libfabric/releases/download/v"
|
||
version "/libfabric-" version ".tar.bz2"))
|
||
(sha256
|
||
(base32 "0b34p88w399jabdf77jpskxyv2j60nwxlsj3lyk9svjy9458wg6v"))))
|
||
|
||
(inputs `(("gcc", gcc-11)
|
||
("rdma-core", glicid-specific-rdma-core-gcc-11)
|
||
,@(package-inputs libfabric)))
|
||
)
|
||
)
|
||
|
||
(define-public glicid-specific-ucx-gcc-11
|
||
(package
|
||
(inherit ucx)
|
||
(name "glicid-specific-ucx-gcc-11")
|
||
(version "1.10.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/openucx/ucx/releases/download/v" version "/ucx-" version ".tar.gz" ))
|
||
(sha256 (base32 "0bdrbp86snq5z0y66zzxs7ig33g9h59kag11rc1lqwll3d5y51dq"))
|
||
))
|
||
|
||
(inputs `(("gcc", gcc-11)
|
||
("gfortran", gfortran-11)
|
||
("libfabric", glicid-specific-libfabric-gcc-11)
|
||
("rdma-core",glicid-specific-rdma-core-gcc-11)
|
||
|
||
,@(package-inputs ucx)))
|
||
)
|
||
)
|
||
|
||
(define-public glicid-specific-ucx-gcc-10
|
||
(package
|
||
(inherit ucx)
|
||
(name "glicid-specific-ucx-gcc-10")
|
||
(version "1.9.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/openucx/ucx/releases/download/v" version "/ucx-" version ".tar.gz" ))
|
||
(sha256 (base32 "1yrmwvjxi3najax1wz4irpzxns6cp74ksdx4i1049mf03n2ci8m7"))
|
||
))
|
||
|
||
(inputs `(("gcc", gcc-10)
|
||
("gfortran", gfortran-10)
|
||
("libfabric", glicid-specific-libfabric-gcc-11)
|
||
("rdma-core",glicid-specific-rdma-core-gcc-11)
|
||
|
||
,@(package-inputs ucx)))
|
||
)
|
||
)
|
||
|
||
|
||
(define-public glicid-specific-openmpi
|
||
(package
|
||
(inherit glicid-openmpi-gcc-11)
|
||
(name "glicid-specific-openmpi")
|
||
(inputs `(
|
||
("gcc",gcc-11)
|
||
("rdma-core",glicid-specific-rdma-core-gcc-11)
|
||
("ucx",glicid-specific-ucx-gcc-10)
|
||
("libfabric",glicid-specific-libfabric-gcc-11)
|
||
,@(package-inputs glicid-openmpi-gcc-11)))
|
||
)
|
||
)
|
||
|
||
(define-public glicid-specific-intel-mpi-benchmarks
|
||
(package
|
||
(inherit glicid-intel-mpi-benchmarks)
|
||
(name "glicid-specific-intel-mpi-benchmarks")
|
||
(inputs `(("openmpi", glicid-specific-openmpi)
|
||
("gcc",gcc-11)
|
||
,@(package-inputs glicid-intel-mpi-benchmarks)))
|
||
)
|
||
)
|
||
|
||
|
||
(define-public glicid-specific-hdf5
|
||
(package
|
||
(inherit hdf5-1.12)
|
||
(name "glicid-specific-hdf5")
|
||
; (arguments
|
||
; `(#:tests? #f)
|
||
; )
|
||
(native-inputs `(
|
||
("gcc",gcc-11)
|
||
("gfortran",gfortran-11)
|
||
,@(package-native-inputs hdf5-1.12)))
|
||
)
|
||
)
|
||
|
||
(define-public glicid-specific-hdf5-parallel-openmpi
|
||
(package/inherit glicid-specific-hdf5 ;use the latest
|
||
(name "glicid-specific-hdf5-parallel-openmpi")
|
||
(inputs
|
||
`(("mpi" ,glicid-specific-openmpi)
|
||
,@(package-inputs glicid-specific-hdf5)))
|
||
(arguments
|
||
|
||
; `(
|
||
; #:tests? #f
|
||
|
||
(
|
||
substitute-keyword-arguments (package-arguments glicid-specific-hdf5)
|
||
((#:configure-flags flags)
|
||
``("--enable-parallel" "--disable-tests"
|
||
,@(delete "--enable-cxx"
|
||
(delete "--enable-threadsafe" ,flags))))
|
||
((#:phases phases)
|
||
`(modify-phases ,phases
|
||
(add-after 'build 'mpi-setup
|
||
,%openmpi-setup)
|
||
(add-before 'check 'patch-tests
|
||
(lambda _
|
||
;; OpenMPI's mpirun will exit with non-zero status if it
|
||
;; detects an "abnormal termination", i.e. any process not
|
||
;; calling MPI_Finalize(). Since the test is explicitly
|
||
;; avoiding MPI_Finalize so as not to have at_exit and thus
|
||
;; H5C_flush_cache from being called, mpirun will always
|
||
;; complain, so turn this test off.
|
||
(substitute* "testpar/Makefile"
|
||
(("(^TEST_PROG_PARA.*)t_pflush1(.*)" front back)
|
||
(string-append front back "\n")))
|
||
(substitute* "tools/test/h5diff/testph5diff.sh"
|
||
(("/bin/sh") (which "sh")))
|
||
#t))))
|
||
|
||
))
|
||
|
||
|
||
|
||
(synopsis "Management suite for data with parallel IO support")))
|
||
|
||
|
||
|
||
(define-public glicid-specific-openblas
|
||
(package
|
||
(inherit openblas)
|
||
(name "glicid-specific-openblas")
|
||
(inputs `(
|
||
("fortran-lib",gfortran-11 "lib")
|
||
,@(package-inputs openblas)))
|
||
(native-inputs `(
|
||
("gcc", gcc-11)
|
||
("fortran" ,gfortran-11)
|
||
,@(package-native-inputs openblas)))
|
||
)
|
||
)
|
||
|
||
(define-public glicid-vspecific-openblas
|
||
(package
|
||
(inherit openblas)
|
||
(name "glicid-vspecific-openblas")
|
||
(version "0.3.15")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://github.com/xianyi/OpenBLAS/releases/download/v" version "/OpenBLAS-" version ".tar.gz" ))
|
||
; (file-name (string-append name "-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"1gjbkrsh6n28hdp2ciyjigc8vg764d2r0jbzl63v753mjzn9va9h"))))
|
||
|
||
(name "glicid-specific-openblas")
|
||
(inputs `(
|
||
("fortran-lib",gfortran-11 "lib")
|
||
,@(package-inputs openblas)))
|
||
(native-inputs `(
|
||
("gcc", gcc-11)
|
||
("fortran" ,gfortran-11)
|
||
,@(package-native-inputs openblas)))
|
||
)
|
||
)
|
||
|
||
(define-public glicid-specific-cmake
|
||
(package
|
||
(inherit cmake)
|
||
(name "glicid-specific-cmake")
|
||
(version "3.20.2")
|
||
;; TODO: Move the following source field to the cmake-bootstrap package in
|
||
;; the next rebuild cycle.
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://cmake.org/files/v"
|
||
(version-major+minor version)
|
||
"/cmake-" version ".tar.gz"))
|
||
(sha256
|
||
(base32
|
||
"0kjlb7sxbwg8z4027c3jjcmyjh9d36p0r9d4nqxynyaijz5nxkxf"))))
|
||
)
|
||
)
|
||
|
||
|
||
(define-public glicid-keepalived
|
||
(package
|
||
(inherit keepalived)
|
||
(name "glicid-keepalived")
|
||
(version "2.1.5")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append
|
||
"http://www.keepalived.org/software/keepalived-"
|
||
version ".tar.gz"))
|
||
|
||
(sha256
|
||
(base32
|
||
"0n92fdlmm251scq2j7w1nqwly8jsla4sxrd0jnfb6nn9qp5pqkfr"))))
|
||
|
||
(arguments
|
||
`(#:configure-flags
|
||
(list (string-append "--enable-snmp")
|
||
(string-append "--enable-snmp-checker")
|
||
(string-append "--enable-snmp-rfc")
|
||
)
|
||
)
|
||
|
||
)
|
||
|
||
|
||
(inputs `(("net-snmp", net-snmp)
|
||
,@(package-inputs keepalived)))
|
||
|
||
|
||
|
||
)
|
||
)
|
||
|
||
(define-public glicid-motif
|
||
(package
|
||
(name "glicid-motif")
|
||
(version "2.3.8")
|
||
(source (origin
|
||
(method url-fetch)
|
||
(uri (string-append "https://sourceforge.net/projects/motif/files/Motif%202.3.8%20Source%20Code/motif-2.3.8.tar.gz/download"))
|
||
|
||
(sha256 (base32 "1rxwkrhmj8sfg7dwmkhq885valwqbh26d79033q7vb7fcqv756w5"))
|
||
)
|
||
)
|
||
(build-system gnu-build-system)
|
||
|
||
(arguments
|
||
`(#:make-flags
|
||
;; #:make-flags
|
||
(list (string-append "PREFIX=" %output)
|
||
; (string-append "CC=" ,(cc-for-target))
|
||
;; Xft.h #includes <ft2build.h> without ‘freetype2/’. The Makefile
|
||
;; works around this by hard-coding /usr/include & $PREFIX.
|
||
(string-append "CPPFLAGS=-I"
|
||
(assoc-ref %build-inputs "freetype")
|
||
"/include/freetype2")
|
||
"V=1")
|
||
)
|
||
)
|
||
|
||
(inputs
|
||
`(("libxext" ,libxext)
|
||
("libx11", libx11)
|
||
("freetype",freetype)
|
||
("libxft",libxft)
|
||
("xbitmaps",xbitmaps)
|
||
("pkg-config" ,pkg-config)
|
||
("flex" ,flex)
|
||
("bison" ,bison)
|
||
("libxt" ,libxt)))
|
||
|
||
(synopsis "Motif")
|
||
(description "Motif ")
|
||
(home-page "https://sourceforge.net/untested")
|
||
(license " ")
|
||
|
||
)
|
||
)
|
||
|
||
(define-public glicid-xmgrace
|
||
(package
|
||
(name "glicid-xmgrace")
|
||
(version "5.1.25")
|
||
(source (origin
|
||
(method git-fetch)
|
||
(uri (git-reference
|
||
(url "https://oauth2:9i-PgbC2w_JEx6DUUqzf@gitlab.univ-nantes.fr/CCIPL/legacy_code_mirror/grace.git")
|
||
(commit (string-append "v" version))))
|
||
(sha256 (base32 "1wb8v0q8xa2akas0swpgdgw1s66i50k7kh1g2f894hnk91fzx56z"))
|
||
)
|
||
)
|
||
(build-system gnu-build-system)
|
||
|
||
(arguments
|
||
`(
|
||
#:phases
|
||
(modify-phases %standard-phases
|
||
(add-after 'configure 'patch-/bin/sh
|
||
(lambda _
|
||
(substitute* '("Make.conf")
|
||
(("/bin/sh") (which "bash"))
|
||
)
|
||
)
|
||
)
|
||
)
|
||
)
|
||
)
|
||
|
||
(inputs
|
||
`(
|
||
("libx11", libx11)
|
||
("libxft",libxft)
|
||
("libxt",libxt)
|
||
("libxpm",libxpm)
|
||
("libxext" ,libxext)
|
||
("autoconf", autoconf)
|
||
("glicid-motif" ,glicid-motif)
|
||
("fontconfig", fontconfig)
|
||
("gfortran", gfortran)
|
||
("libjpeg-turbo", libjpeg-turbo)
|
||
;; ("libxmhtml", libxmhtml)
|
||
)
|
||
)
|
||
|
||
|
||
(synopsis "Xmgrace")
|
||
(description "xmgrace")
|
||
(home-page "https://sourceforge.net/untested")
|
||
(license " ")
|
||
|
||
)
|
||
)
|
||
|
||
(use-modules (guix packages))
|
||
(use-modules (guix download))
|
||
(use-modules (gnu packages ruby))
|
||
(use-modules (guix build-system ruby))
|
||
;(use-modules (guix licenses))
|
||
|
||
|
||
|
||
(define-public ruby-asciidoctor-revealjs
|
||
(package
|
||
(name "ruby-asciidoctor-revealjs")
|
||
(version "4.1.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (rubygems-uri "asciidoctor-revealjs" version))
|
||
(sha256
|
||
(base32
|
||
"03vmbcc3x059h17ry4qwk1p0yar9wgh87l2qssi307gy45cjw2mq"))))
|
||
(build-system ruby-build-system)
|
||
(arguments
|
||
'(#:tests? #f))
|
||
(propagated-inputs
|
||
`(("ruby-asciidoctor" ,ruby-asciidoctor)
|
||
; ("ruby-concurrent-ruby" ,ruby-concurrent-ruby)
|
||
("ruby-concurrent" ,ruby-concurrent)
|
||
("ruby-asciidoctor-kroki", ruby-asciidoctor-kroki)
|
||
("ruby-thread-safe" ,ruby-thread-safe)))
|
||
(synopsis
|
||
"Converts AsciiDoc documents into HTML5 presentations designed to be executed by the reveal.js presentation framework.")
|
||
(description
|
||
"Converts AsciiDoc documents into HTML5 presentations designed to be executed by the reveal.js presentation framework.")
|
||
(home-page
|
||
"https://github.com/asciidoctor/asciidoctor-reveal.js")
|
||
(license license:expat))
|
||
)
|
||
|
||
(define-public ruby-asciidoctor-kroki
|
||
(package
|
||
(name "ruby-asciidoctor-kroki")
|
||
(version "0.4.0")
|
||
(source
|
||
(origin
|
||
(method url-fetch)
|
||
(uri (rubygems-uri "asciidoctor-kroki" version))
|
||
(sha256
|
||
(base32
|
||
"13gx22xld4rbxxirnsxyrsajy9v666r8a4ngms71611af5afgk6w"))))
|
||
(build-system ruby-build-system)
|
||
(arguments
|
||
'(#:tests? #f))
|
||
(propagated-inputs
|
||
`(("ruby-asciidoctor" ,ruby-asciidoctor)))
|
||
(synopsis
|
||
"An extension for Asciidoctor to convert diagrams to images using https://kroki.io")
|
||
(description
|
||
"An extension for Asciidoctor to convert diagrams to images using https://kroki.io")
|
||
(home-page
|
||
"https://github.com/Mogztter/asciidoctor-kroki")
|
||
(license license:expat)
|
||
)
|
||
)
|
||
|
||
|
||
;;; glicid.scm ends here
|